Hb_008097_020

Information

Type -
Description -
Location Contig8097: 50149-57061
Sequence    

Annotation

kegg
ID rcu:RCOM_1035000
description receptor protein kinase, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_012067859.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59193: 52311-53458 , PASA_asmbl_59195: 56888-57098
cDNA
(Sanger)
(ID:Location)		 003_P06.ab1: 52311-53085

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008097_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
2 Hb_004800_220 0.1589470427 - - PREDICTED: random slug protein 5 [Jatropha curcas]
3 Hb_006538_010 0.1596219318 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
4 Hb_011063_060 0.1632548144 - - PREDICTED: endochitinase-like [Jatropha curcas]
5 Hb_005010_040 0.1700735228 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
6 Hb_000684_490 0.1724195436 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
7 Hb_001454_300 0.1741601147 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_020902_020 0.1817780215 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
9 Hb_010334_040 0.1840596872 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
10 Hb_131864_020 0.1842708883 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
11 Hb_000005_350 0.1842885342 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
12 Hb_012553_020 0.1854310084 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
13 Hb_000265_080 0.1871832452 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
14 Hb_000589_100 0.1887374682 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_031042_030 0.190797344 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
16 Hb_006788_150 0.1908283207 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012753_190 0.1911968559 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
18 Hb_002046_100 0.1920681795 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
19 Hb_000471_010 0.1930357413 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001775_050 0.1933868474 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]

Gene co-expression network

sample Hb_008097_020 Hb_008097_020 Hb_004800_220 Hb_004800_220 Hb_008097_020--Hb_004800_220 Hb_006538_010 Hb_006538_010 Hb_008097_020--Hb_006538_010 Hb_011063_060 Hb_011063_060 Hb_008097_020--Hb_011063_060 Hb_005010_040 Hb_005010_040 Hb_008097_020--Hb_005010_040 Hb_000684_490 Hb_000684_490 Hb_008097_020--Hb_000684_490 Hb_001454_300 Hb_001454_300 Hb_008097_020--Hb_001454_300 Hb_002200_060 Hb_002200_060 Hb_004800_220--Hb_002200_060 Hb_000265_080 Hb_000265_080 Hb_004800_220--Hb_000265_080 Hb_008145_010 Hb_008145_010 Hb_004800_220--Hb_008145_010 Hb_025526_080 Hb_025526_080 Hb_004800_220--Hb_025526_080 Hb_012753_190 Hb_012753_190 Hb_004800_220--Hb_012753_190 Hb_001014_150 Hb_001014_150 Hb_006538_010--Hb_001014_150 Hb_006788_150 Hb_006788_150 Hb_006538_010--Hb_006788_150 Hb_006538_010--Hb_005010_040 Hb_005116_010 Hb_005116_010 Hb_006538_010--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_006538_010--Hb_009627_040 Hb_000661_230 Hb_000661_230 Hb_006538_010--Hb_000661_230 Hb_001660_040 Hb_001660_040 Hb_011063_060--Hb_001660_040 Hb_008225_080 Hb_008225_080 Hb_011063_060--Hb_008225_080 Hb_010334_040 Hb_010334_040 Hb_011063_060--Hb_010334_040 Hb_000288_140 Hb_000288_140 Hb_011063_060--Hb_000288_140 Hb_000025_740 Hb_000025_740 Hb_011063_060--Hb_000025_740 Hb_011063_060--Hb_005010_040 Hb_005010_040--Hb_005116_010 Hb_005010_040--Hb_009627_040 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_005010_040--Hb_010334_040 Hb_000010_200 Hb_000010_200 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090 Hb_000471_010 Hb_000471_010 Hb_000684_490--Hb_000471_010 Hb_004586_110 Hb_004586_110 Hb_000684_490--Hb_004586_110 Hb_011861_020 Hb_011861_020 Hb_000684_490--Hb_011861_020 Hb_000005_350 Hb_000005_350 Hb_000684_490--Hb_000005_350 Hb_000684_490--Hb_010334_040 Hb_116469_010 Hb_116469_010 Hb_000684_490--Hb_116469_010 Hb_001279_220 Hb_001279_220 Hb_001454_300--Hb_001279_220 Hb_001369_320 Hb_001369_320 Hb_001454_300--Hb_001369_320 Hb_175968_010 Hb_175968_010 Hb_001454_300--Hb_175968_010 Hb_004712_080 Hb_004712_080 Hb_001454_300--Hb_004712_080 Hb_001691_060 Hb_001691_060 Hb_001454_300--Hb_001691_060 Hb_001775_050 Hb_001775_050 Hb_001454_300--Hb_001775_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.550409 0.807406 0.292378 0 0.0408103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00926271 0.266575 3.73976 0.37672

CAGE analysis