Hb_008103_040

Information

Type -
Description -
Location Contig8103: 39747-48033
Sequence    

Annotation

kegg
ID rcu:RCOM_1047540
description type 1 diacylglycerol acyltransferase (EC:2.3.1.20)
nr
ID NP_001292926.1
description diacylglycerol O-acyltransferase 1 [Jatropha curcas]
swissprot
ID Q9SLD2
description Diacylglycerol O-acyltransferase 1 OS=Arabidopsis thaliana GN=DGAT1 PE=1 SV=2
trembl
ID Q27ZJ3
description O-acyltransferase OS=Jatropha curcas GN=DGAT1 PE=2 SV=1
Gene Ontology
ID GO:0004144
description type 1 diacylglycerol acyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59217: 42674-43165 , PASA_asmbl_59218: 39686-47753 , PASA_asmbl_59220: 43223-43364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_040 0.0 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
2 Hb_001541_090 0.074411213 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
3 Hb_009529_030 0.0781283393 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
4 Hb_005147_060 0.0828609275 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
5 Hb_001341_120 0.0889880354 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
6 Hb_007426_150 0.0903340336 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
7 Hb_000212_320 0.0919347604 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
8 Hb_002273_120 0.0924059146 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
9 Hb_004659_020 0.0931181839 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
10 Hb_005211_100 0.0938597058 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
11 Hb_002783_240 0.0949326823 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
12 Hb_001488_410 0.0988245393 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
13 Hb_000392_370 0.1020821721 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
14 Hb_001675_070 0.1052060222 - - eukaryotic translation elongation factor, putative [Ricinus communis]
15 Hb_002785_050 0.1055022721 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_017700_010 0.105585935 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
17 Hb_001300_070 0.1059502919 - - OTU domain-containing protein 6B, putative [Ricinus communis]
18 Hb_000345_360 0.1093694217 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
19 Hb_017295_010 0.1095069045 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
20 Hb_103012_010 0.1109461559 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]

Gene co-expression network

sample Hb_008103_040 Hb_008103_040 Hb_001541_090 Hb_001541_090 Hb_008103_040--Hb_001541_090 Hb_009529_030 Hb_009529_030 Hb_008103_040--Hb_009529_030 Hb_005147_060 Hb_005147_060 Hb_008103_040--Hb_005147_060 Hb_001341_120 Hb_001341_120 Hb_008103_040--Hb_001341_120 Hb_007426_150 Hb_007426_150 Hb_008103_040--Hb_007426_150 Hb_000212_320 Hb_000212_320 Hb_008103_040--Hb_000212_320 Hb_002273_130 Hb_002273_130 Hb_001541_090--Hb_002273_130 Hb_001541_090--Hb_001341_120 Hb_030131_040 Hb_030131_040 Hb_001541_090--Hb_030131_040 Hb_001488_410 Hb_001488_410 Hb_001541_090--Hb_001488_410 Hb_003464_020 Hb_003464_020 Hb_001541_090--Hb_003464_020 Hb_002273_120 Hb_002273_120 Hb_009529_030--Hb_002273_120 Hb_017295_010 Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_004732_020 Hb_004732_020 Hb_005147_060--Hb_004732_020 Hb_005211_100 Hb_005211_100 Hb_005147_060--Hb_005211_100 Hb_004659_020 Hb_004659_020 Hb_005147_060--Hb_004659_020 Hb_058643_010 Hb_058643_010 Hb_005147_060--Hb_058643_010 Hb_001691_120 Hb_001691_120 Hb_005147_060--Hb_001691_120 Hb_001341_120--Hb_030131_040 Hb_000076_270 Hb_000076_270 Hb_001341_120--Hb_000076_270 Hb_001341_120--Hb_002273_130 Hb_000480_010 Hb_000480_010 Hb_001341_120--Hb_000480_010 Hb_004837_190 Hb_004837_190 Hb_001341_120--Hb_004837_190 Hb_000913_050 Hb_000913_050 Hb_001341_120--Hb_000913_050 Hb_001195_560 Hb_001195_560 Hb_007426_150--Hb_001195_560 Hb_000933_020 Hb_000933_020 Hb_007426_150--Hb_000933_020 Hb_003018_130 Hb_003018_130 Hb_007426_150--Hb_003018_130 Hb_011618_080 Hb_011618_080 Hb_007426_150--Hb_011618_080 Hb_007426_150--Hb_002273_120 Hb_000429_220 Hb_000429_220 Hb_007426_150--Hb_000429_220 Hb_000212_320--Hb_000933_020 Hb_000212_320--Hb_007426_150 Hb_000608_320 Hb_000608_320 Hb_000212_320--Hb_000608_320 Hb_132697_010 Hb_132697_010 Hb_000212_320--Hb_132697_010 Hb_001310_110 Hb_001310_110 Hb_000212_320--Hb_001310_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4907 5.31513 6.88173 16.1988 21.1691 19.3012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.80767 6.40377 6.81035 10.763 7.01189

CAGE analysis