Hb_008103_050

Information

Type -
Description -
Location Contig8103: 53062-59576
Sequence    

Annotation

kegg
ID rcu:RCOM_1047550
description dead box ATP-dependent RNA helicase, putative
nr
ID KDP33851.1
description hypothetical protein JCGZ_07422 [Jatropha curcas]
swissprot
ID Q8L4M1
description THO complex subunit 6 OS=Arabidopsis thaliana GN=THO6 PE=1 SV=1
trembl
ID A0A067KCB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07422 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tho complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59224: 53062-59531 , PASA_asmbl_59225: 58772-59531
cDNA
(Sanger)
(ID:Location)		 005_D11.ab1: 56197-59502 , 008_C07.ab1: 58765-59482 , 020_B12.ab1: 56699-59491 , 024_H01.ab1: 57791-59502

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_050 0.0 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
2 Hb_000994_120 0.079699376 - - unknown [Populus trichocarpa]
3 Hb_000483_300 0.0825791963 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
4 Hb_001512_010 0.0860931979 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
5 Hb_004157_050 0.0907975422 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
6 Hb_004044_040 0.0922703589 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
7 Hb_066842_010 0.093914047 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
8 Hb_000665_140 0.0942065073 - - PREDICTED: protein MEMO1 [Jatropha curcas]
9 Hb_001366_370 0.0975460419 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
10 Hb_007894_170 0.0982829908 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
11 Hb_001189_070 0.0983923099 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
12 Hb_023371_020 0.0986732745 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
13 Hb_009787_030 0.0991352436 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
14 Hb_000069_720 0.1006865427 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
15 Hb_000115_150 0.1010132786 - - PREDICTED: IST1 homolog [Jatropha curcas]
16 Hb_000167_010 0.1028948209 - - conserved hypothetical protein [Ricinus communis]
17 Hb_076233_040 0.1033834382 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
18 Hb_001301_110 0.104375388 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
19 Hb_001821_110 0.1059632556 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
20 Hb_001946_390 0.1061176445 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_008103_050 Hb_008103_050 Hb_000994_120 Hb_000994_120 Hb_008103_050--Hb_000994_120 Hb_000483_300 Hb_000483_300 Hb_008103_050--Hb_000483_300 Hb_001512_010 Hb_001512_010 Hb_008103_050--Hb_001512_010 Hb_004157_050 Hb_004157_050 Hb_008103_050--Hb_004157_050 Hb_004044_040 Hb_004044_040 Hb_008103_050--Hb_004044_040 Hb_066842_010 Hb_066842_010 Hb_008103_050--Hb_066842_010 Hb_000141_080 Hb_000141_080 Hb_000994_120--Hb_000141_080 Hb_009787_030 Hb_009787_030 Hb_000994_120--Hb_009787_030 Hb_000599_300 Hb_000599_300 Hb_000994_120--Hb_000599_300 Hb_004127_030 Hb_004127_030 Hb_000994_120--Hb_004127_030 Hb_001703_060 Hb_001703_060 Hb_000994_120--Hb_001703_060 Hb_000347_240 Hb_000347_240 Hb_000483_300--Hb_000347_240 Hb_001189_070 Hb_001189_070 Hb_000483_300--Hb_001189_070 Hb_000483_300--Hb_004157_050 Hb_001366_180 Hb_001366_180 Hb_000483_300--Hb_001366_180 Hb_023371_020 Hb_023371_020 Hb_000483_300--Hb_023371_020 Hb_000053_020 Hb_000053_020 Hb_000483_300--Hb_000053_020 Hb_001512_010--Hb_000483_300 Hb_001512_010--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_001512_010--Hb_006478_020 Hb_001512_010--Hb_023371_020 Hb_000329_210 Hb_000329_210 Hb_001512_010--Hb_000329_210 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_000069_720 Hb_000069_720 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_003058_120 Hb_003058_120 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_007894_170 Hb_007894_170 Hb_004044_040--Hb_007894_170 Hb_000174_210 Hb_000174_210 Hb_004044_040--Hb_000174_210 Hb_076233_040 Hb_076233_040 Hb_004044_040--Hb_076233_040 Hb_000331_180 Hb_000331_180 Hb_004044_040--Hb_000331_180 Hb_006816_260 Hb_006816_260 Hb_004044_040--Hb_006816_260 Hb_002392_010 Hb_002392_010 Hb_066842_010--Hb_002392_010 Hb_001946_390 Hb_001946_390 Hb_066842_010--Hb_001946_390 Hb_000590_120 Hb_000590_120 Hb_066842_010--Hb_000590_120 Hb_001269_190 Hb_001269_190 Hb_066842_010--Hb_001269_190 Hb_000185_220 Hb_000185_220 Hb_066842_010--Hb_000185_220 Hb_000136_100 Hb_000136_100 Hb_066842_010--Hb_000136_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16036 3.21386 7.1739 11.6693 3.54929 6.25888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5021 7.59398 6.15211 8.9776 7.68311

CAGE analysis