Hb_008103_080

Information

Type -
Description -
Location Contig8103: 67337-73419
Sequence    

Annotation

kegg
ID rcu:RCOM_1047680
description Lycopene epsilon cyclase, chloroplast precursor, putative (EC:5.3.99.8)
nr
ID XP_012076948.1
description PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
swissprot
ID Q38932
description Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2
trembl
ID A0A067KCI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07418 PE=4 SV=1
Gene Ontology
ID GO:0016705
description lycopene epsilon chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59230: 70581-70730 , PASA_asmbl_59231: 73084-73823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_080 0.0 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
2 Hb_000917_320 0.0942804728 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
3 Hb_000922_140 0.0950246245 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
4 Hb_000963_130 0.0996025856 - - RNA m5u methyltransferase, putative [Ricinus communis]
5 Hb_005332_020 0.1024801442 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_004079_120 0.1056123366 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
7 Hb_000859_050 0.1119279803 - - hypothetical protein JCGZ_17054 [Jatropha curcas]
8 Hb_002093_030 0.1125769925 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
9 Hb_000359_120 0.1158763919 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008887_020 0.1161580953 - - PREDICTED: uncharacterized protein LOC105636191 [Jatropha curcas]
11 Hb_004951_070 0.1183620516 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
12 Hb_002304_060 0.1200205005 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
13 Hb_001198_150 0.1206801586 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]
14 Hb_001953_150 0.1214303577 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
15 Hb_006658_040 0.1217884218 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
16 Hb_000156_160 0.1222081014 - - PREDICTED: urease accessory protein G [Jatropha curcas]
17 Hb_002374_260 0.1227386172 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
18 Hb_002918_060 0.1249150799 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_001511_170 0.1264751766 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
20 Hb_001545_200 0.1267289257 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]

Gene co-expression network

sample Hb_008103_080 Hb_008103_080 Hb_000917_320 Hb_000917_320 Hb_008103_080--Hb_000917_320 Hb_000922_140 Hb_000922_140 Hb_008103_080--Hb_000922_140 Hb_000963_130 Hb_000963_130 Hb_008103_080--Hb_000963_130 Hb_005332_020 Hb_005332_020 Hb_008103_080--Hb_005332_020 Hb_004079_120 Hb_004079_120 Hb_008103_080--Hb_004079_120 Hb_000859_050 Hb_000859_050 Hb_008103_080--Hb_000859_050 Hb_002304_060 Hb_002304_060 Hb_000917_320--Hb_002304_060 Hb_000134_270 Hb_000134_270 Hb_000917_320--Hb_000134_270 Hb_000864_030 Hb_000864_030 Hb_000917_320--Hb_000864_030 Hb_000044_040 Hb_000044_040 Hb_000917_320--Hb_000044_040 Hb_000318_120 Hb_000318_120 Hb_000917_320--Hb_000318_120 Hb_004800_180 Hb_004800_180 Hb_000917_320--Hb_004800_180 Hb_001953_150 Hb_001953_150 Hb_000922_140--Hb_001953_150 Hb_000922_140--Hb_005332_020 Hb_006658_040 Hb_006658_040 Hb_000922_140--Hb_006658_040 Hb_004429_160 Hb_004429_160 Hb_000922_140--Hb_004429_160 Hb_001427_190 Hb_001427_190 Hb_000922_140--Hb_001427_190 Hb_001307_080 Hb_001307_080 Hb_000922_140--Hb_001307_080 Hb_028872_120 Hb_028872_120 Hb_000963_130--Hb_028872_120 Hb_000963_130--Hb_005332_020 Hb_008887_020 Hb_008887_020 Hb_000963_130--Hb_008887_020 Hb_000963_130--Hb_004079_120 Hb_000963_130--Hb_000922_140 Hb_022256_060 Hb_022256_060 Hb_000963_130--Hb_022256_060 Hb_005332_020--Hb_001953_150 Hb_002422_050 Hb_002422_050 Hb_005332_020--Hb_002422_050 Hb_005332_020--Hb_008887_020 Hb_000152_260 Hb_000152_260 Hb_005332_020--Hb_000152_260 Hb_001143_250 Hb_001143_250 Hb_005332_020--Hb_001143_250 Hb_002374_260 Hb_002374_260 Hb_005332_020--Hb_002374_260 Hb_002739_130 Hb_002739_130 Hb_004079_120--Hb_002739_130 Hb_006452_160 Hb_006452_160 Hb_004079_120--Hb_006452_160 Hb_000077_010 Hb_000077_010 Hb_004079_120--Hb_000077_010 Hb_000156_160 Hb_000156_160 Hb_004079_120--Hb_000156_160 Hb_016734_090 Hb_016734_090 Hb_004079_120--Hb_016734_090 Hb_005333_160 Hb_005333_160 Hb_000859_050--Hb_005333_160 Hb_001511_170 Hb_001511_170 Hb_000859_050--Hb_001511_170 Hb_003739_030 Hb_003739_030 Hb_000859_050--Hb_003739_030 Hb_000859_050--Hb_000922_140 Hb_171900_070 Hb_171900_070 Hb_000859_050--Hb_171900_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80475 1.27575 1.9626 0.424814 2.34936 1.75035
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.901857 0.794599 0.371304 1.38453 1.77109

CAGE analysis