Hb_008103_110

Information

Type -
Description -
Location Contig8103: 88562-95737
Sequence    

Annotation

kegg
ID rcu:RCOM_1046610
description ATP binding protein, putative
nr
ID XP_002514100.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q8S8S7
description U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=3 SV=1
trembl
ID B9RK56
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1046610 PE=3 SV=1
Gene Ontology
ID GO:0004672
description u-box domain-containing protein 34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59237: 88578-89224 , PASA_asmbl_59238: 91339-95084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_110 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000886_050 0.0946398844 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
3 Hb_000878_070 0.0959926036 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
4 Hb_001225_030 0.0966471653 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
5 Hb_000803_070 0.0994171275 - - PREDICTED: protein TRAUCO [Jatropha curcas]
6 Hb_006588_210 0.1000659223 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
7 Hb_005137_050 0.1047921936 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
8 Hb_002078_220 0.1049755035 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
9 Hb_000861_080 0.1052777711 - - PREDICTED: protein ELC-like [Jatropha curcas]
10 Hb_011930_110 0.1062476027 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
11 Hb_003175_030 0.1087183178 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
12 Hb_008695_090 0.1087915024 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
13 Hb_001104_170 0.1093457759 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
14 Hb_002820_030 0.1095835578 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
15 Hb_001789_060 0.110309631 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
16 Hb_000407_040 0.1105914249 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
17 Hb_006949_020 0.1106900698 - - PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1 [Jatropha curcas]
18 Hb_000061_470 0.1107390799 - - PREDICTED: LOW QUALITY PROTEIN: DNA annealing helicase and endonuclease ZRANB3 [Jatropha curcas]
19 Hb_002411_030 0.1115066471 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
20 Hb_002046_110 0.1115807003 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008103_110 Hb_008103_110 Hb_000886_050 Hb_000886_050 Hb_008103_110--Hb_000886_050 Hb_000878_070 Hb_000878_070 Hb_008103_110--Hb_000878_070 Hb_001225_030 Hb_001225_030 Hb_008103_110--Hb_001225_030 Hb_000803_070 Hb_000803_070 Hb_008103_110--Hb_000803_070 Hb_006588_210 Hb_006588_210 Hb_008103_110--Hb_006588_210 Hb_005137_050 Hb_005137_050 Hb_008103_110--Hb_005137_050 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090 Hb_000878_070--Hb_000886_050 Hb_000061_470 Hb_000061_470 Hb_000878_070--Hb_000061_470 Hb_000649_110 Hb_000649_110 Hb_000878_070--Hb_000649_110 Hb_004586_140 Hb_004586_140 Hb_000878_070--Hb_004586_140 Hb_004586_300 Hb_004586_300 Hb_000878_070--Hb_004586_300 Hb_003682_030 Hb_003682_030 Hb_001225_030--Hb_003682_030 Hb_000375_290 Hb_000375_290 Hb_001225_030--Hb_000375_290 Hb_000645_170 Hb_000645_170 Hb_001225_030--Hb_000645_170 Hb_004870_050 Hb_004870_050 Hb_001225_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_001225_030--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_001225_030--Hb_001754_030 Hb_000803_070--Hb_000861_080 Hb_001728_050 Hb_001728_050 Hb_000803_070--Hb_001728_050 Hb_032264_060 Hb_032264_060 Hb_000803_070--Hb_032264_060 Hb_003929_280 Hb_003929_280 Hb_000803_070--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_000803_070--Hb_001751_140 Hb_003927_040 Hb_003927_040 Hb_000803_070--Hb_003927_040 Hb_000260_180 Hb_000260_180 Hb_006588_210--Hb_000260_180 Hb_001410_020 Hb_001410_020 Hb_006588_210--Hb_001410_020 Hb_000340_400 Hb_000340_400 Hb_006588_210--Hb_000340_400 Hb_006588_210--Hb_004870_050 Hb_000087_060 Hb_000087_060 Hb_006588_210--Hb_000087_060 Hb_002073_200 Hb_002073_200 Hb_006588_210--Hb_002073_200 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_001247_130 Hb_001247_130 Hb_005137_050--Hb_001247_130 Hb_002411_030 Hb_002411_030 Hb_005137_050--Hb_002411_030 Hb_032208_040 Hb_032208_040 Hb_005137_050--Hb_032208_040 Hb_005137_050--Hb_000061_470 Hb_000130_240 Hb_000130_240 Hb_005137_050--Hb_000130_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.3661 44.1718 32.0084 13.3681 19.1102 15.3944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1812 16.7962 19.265 16.9992 11.1556

CAGE analysis