Hb_008112_010

Information

Type -
Description -
Location Contig8112: 14120-15415
Sequence    

Annotation

kegg
ID rcu:RCOM_0782170
description UDP-glucuronate 5-epimerase, putative (EC:5.1.3.12)
nr
ID XP_012071600.1
description PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
swissprot
ID Q9M0B6
description UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1
trembl
ID A0A067KRD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04104 PE=4 SV=1
Gene Ontology
ID GO:0005768
description udp-glucuronate 4-epimerase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 027_I08.ab1: 14832-15515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008112_010 0.0 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
2 Hb_000009_200 0.0959793069 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
3 Hb_056196_060 0.1023344635 - - hexokinase [Manihot esculenta]
4 Hb_005714_100 0.1032567827 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
5 Hb_000035_050 0.1118401013 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
6 Hb_001085_300 0.1134164475 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
7 Hb_000735_140 0.1203103145 - - 3-glucanase family protein [Populus trichocarpa]
8 Hb_003670_030 0.1276831613 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
9 Hb_002849_070 0.1304077285 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
10 Hb_000523_030 0.1336198705 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
11 Hb_001329_080 0.1386181188 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
12 Hb_001195_350 0.1386702985 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
13 Hb_002122_030 0.1398477961 - - -
14 Hb_005064_070 0.1408294756 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
15 Hb_000200_170 0.1415720294 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
16 Hb_001133_010 0.1437781676 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000056_080 0.1447579296 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
18 Hb_001246_160 0.1455710477 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
19 Hb_008248_020 0.1460792456 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
20 Hb_003849_190 0.1464555488 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]

Gene co-expression network

sample Hb_008112_010 Hb_008112_010 Hb_000009_200 Hb_000009_200 Hb_008112_010--Hb_000009_200 Hb_056196_060 Hb_056196_060 Hb_008112_010--Hb_056196_060 Hb_005714_100 Hb_005714_100 Hb_008112_010--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_008112_010--Hb_000035_050 Hb_001085_300 Hb_001085_300 Hb_008112_010--Hb_001085_300 Hb_000735_140 Hb_000735_140 Hb_008112_010--Hb_000735_140 Hb_000009_200--Hb_005714_100 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000009_200--Hb_000035_050 Hb_000009_200--Hb_056196_060 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_018790_050 Hb_018790_050 Hb_056196_060--Hb_018790_050 Hb_056196_060--Hb_000035_050 Hb_056196_060--Hb_005714_100 Hb_005714_100--Hb_000035_050 Hb_002875_070 Hb_002875_070 Hb_005714_100--Hb_002875_070 Hb_001376_010 Hb_001376_010 Hb_005714_100--Hb_001376_010 Hb_004117_170 Hb_004117_170 Hb_000035_050--Hb_004117_170 Hb_013358_020 Hb_013358_020 Hb_000035_050--Hb_013358_020 Hb_000035_050--Hb_018790_050 Hb_000035_050--Hb_001376_010 Hb_001085_300--Hb_056196_060 Hb_000272_110 Hb_000272_110 Hb_001085_300--Hb_000272_110 Hb_001318_150 Hb_001318_150 Hb_001085_300--Hb_001318_150 Hb_003018_030 Hb_003018_030 Hb_001085_300--Hb_003018_030 Hb_004837_220 Hb_004837_220 Hb_001085_300--Hb_004837_220 Hb_002849_070 Hb_002849_070 Hb_000735_140--Hb_002849_070 Hb_003849_190 Hb_003849_190 Hb_000735_140--Hb_003849_190 Hb_143766_030 Hb_143766_030 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000056_080 Hb_000056_080 Hb_000735_140--Hb_000056_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2523 65.6525 55.0922 63.0256 6.56781 6.33421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.55278 4.86421 9.30028 19.4824 17.0686

CAGE analysis