Hb_008112_040

Information

Type -
Description -
Location Contig8112: 48190-49454
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20150g
description hypothetical protein
nr
ID XP_012076166.1
description PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
swissprot
ID Q5ZM20
description RecQ-mediated genome instability protein 2 OS=Gallus gallus GN=RMI2 PE=2 SV=1
trembl
ID A0A067KH80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11231 PE=4 SV=1
Gene Ontology
ID GO:0003676
description recq-mediated genome instability protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59261: 48239-49389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008112_040 0.0 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
2 Hb_007154_020 0.0847075105 - - -
3 Hb_013405_060 0.0868711305 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
4 Hb_004363_010 0.0903091913 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
5 Hb_000025_230 0.0927912035 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
6 Hb_028841_030 0.0930036867 - - -
7 Hb_003687_230 0.0952470548 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
8 Hb_001934_030 0.0959676767 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
9 Hb_000009_530 0.0971734643 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
10 Hb_001348_070 0.0999143792 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_005186_050 0.1001073542 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
12 Hb_001776_090 0.1002128973 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
13 Hb_000395_290 0.100768145 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
14 Hb_011381_060 0.102902575 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
15 Hb_001459_080 0.1031929362 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_002374_170 0.104854194 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
17 Hb_168878_010 0.1060739487 - - 60S ribosomal protein L32A [Hevea brasiliensis]
18 Hb_002292_010 0.1062286316 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
19 Hb_003363_110 0.1062897439 - - protein with unknown function [Ricinus communis]
20 Hb_003069_010 0.1076366654 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_008112_040 Hb_008112_040 Hb_007154_020 Hb_007154_020 Hb_008112_040--Hb_007154_020 Hb_013405_060 Hb_013405_060 Hb_008112_040--Hb_013405_060 Hb_004363_010 Hb_004363_010 Hb_008112_040--Hb_004363_010 Hb_000025_230 Hb_000025_230 Hb_008112_040--Hb_000025_230 Hb_028841_030 Hb_028841_030 Hb_008112_040--Hb_028841_030 Hb_003687_230 Hb_003687_230 Hb_008112_040--Hb_003687_230 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_007441_210 Hb_007441_210 Hb_013405_060--Hb_007441_210 Hb_013405_060--Hb_011381_060 Hb_013405_060--Hb_007154_020 Hb_002868_010 Hb_002868_010 Hb_013405_060--Hb_002868_010 Hb_013405_060--Hb_028841_030 Hb_002292_010 Hb_002292_010 Hb_004363_010--Hb_002292_010 Hb_000976_260 Hb_000976_260 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_004363_010--Hb_007441_210 Hb_007007_050 Hb_007007_050 Hb_004363_010--Hb_007007_050 Hb_001459_080 Hb_001459_080 Hb_000025_230--Hb_001459_080 Hb_003607_150 Hb_003607_150 Hb_000025_230--Hb_003607_150 Hb_168878_010 Hb_168878_010 Hb_000025_230--Hb_168878_010 Hb_002374_170 Hb_002374_170 Hb_000025_230--Hb_002374_170 Hb_000025_230--Hb_011381_060 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_028841_030--Hb_005186_050 Hb_028841_030--Hb_011381_060 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8319 10.2329 19.8367 5.42316 18.4375 12.4463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7934 28.2866 10.0143 4.19036 3.56045

CAGE analysis