Hb_008114_050

Information

Type -
Description -
Location Contig8114: 86104-90935
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02430g
description POPTRDRAFT_761894; hypothetical protein
nr
ID XP_002308832.2
description hypothetical protein POPTR_0006s02430g [Populus trichocarpa]
swissprot
ID Q80V62
description Fanconi anemia group D2 protein homolog OS=Mus musculus GN=Fancd2 PE=1 SV=2
trembl
ID B9HDF3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02430g PE=4 SV=2
Gene Ontology
ID GO:0009507
description fanconi anemia group d2 protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59266: 88300-88690 , PASA_asmbl_59267: 89349-90069 , PASA_asmbl_59269: 90639-91031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008114_050 0.0 - - hypothetical protein POPTR_0006s02430g [Populus trichocarpa]
2 Hb_012146_050 0.0826741975 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
3 Hb_028872_070 0.0832573602 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
4 Hb_000256_020 0.0902896541 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
5 Hb_001431_120 0.0935052746 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
6 Hb_003645_060 0.0973160157 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
7 Hb_001754_040 0.097833312 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
8 Hb_009771_110 0.0978549699 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
9 Hb_006618_090 0.1033118814 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
10 Hb_002686_040 0.1037746338 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
11 Hb_088144_020 0.1072323747 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 6-like isoform X1 [Jatropha curcas]
12 Hb_000103_570 0.1085568377 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
13 Hb_001381_050 0.1088395027 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_004411_030 0.10910375 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
15 Hb_000603_030 0.1091757051 - - Ribonuclease III, putative [Ricinus communis]
16 Hb_001935_110 0.1099904495 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
17 Hb_004064_050 0.1101212782 - - Structural maintenance of chromosome, putative [Ricinus communis]
18 Hb_005402_040 0.1107915371 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
19 Hb_000082_010 0.1109385837 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
20 Hb_019654_040 0.1114098571 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008114_050 Hb_008114_050 Hb_012146_050 Hb_012146_050 Hb_008114_050--Hb_012146_050 Hb_028872_070 Hb_028872_070 Hb_008114_050--Hb_028872_070 Hb_000256_020 Hb_000256_020 Hb_008114_050--Hb_000256_020 Hb_001431_120 Hb_001431_120 Hb_008114_050--Hb_001431_120 Hb_003645_060 Hb_003645_060 Hb_008114_050--Hb_003645_060 Hb_001754_040 Hb_001754_040 Hb_008114_050--Hb_001754_040 Hb_012146_050--Hb_001431_120 Hb_005402_040 Hb_005402_040 Hb_012146_050--Hb_005402_040 Hb_143489_010 Hb_143489_010 Hb_012146_050--Hb_143489_010 Hb_143489_020 Hb_143489_020 Hb_012146_050--Hb_143489_020 Hb_000788_070 Hb_000788_070 Hb_012146_050--Hb_000788_070 Hb_000603_030 Hb_000603_030 Hb_028872_070--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_028872_070--Hb_000398_080 Hb_160459_040 Hb_160459_040 Hb_028872_070--Hb_160459_040 Hb_004096_190 Hb_004096_190 Hb_028872_070--Hb_004096_190 Hb_009771_110 Hb_009771_110 Hb_028872_070--Hb_009771_110 Hb_133702_030 Hb_133702_030 Hb_028872_070--Hb_133702_030 Hb_001723_140 Hb_001723_140 Hb_000256_020--Hb_001723_140 Hb_088144_020 Hb_088144_020 Hb_000256_020--Hb_088144_020 Hb_004064_050 Hb_004064_050 Hb_000256_020--Hb_004064_050 Hb_000184_150 Hb_000184_150 Hb_000256_020--Hb_000184_150 Hb_002045_250 Hb_002045_250 Hb_000256_020--Hb_002045_250 Hb_001171_030 Hb_001171_030 Hb_000256_020--Hb_001171_030 Hb_001341_180 Hb_001341_180 Hb_001431_120--Hb_001341_180 Hb_001431_120--Hb_005402_040 Hb_001431_120--Hb_003645_060 Hb_001431_120--Hb_004064_050 Hb_001381_050 Hb_001381_050 Hb_001431_120--Hb_001381_050 Hb_000563_130 Hb_000563_130 Hb_003645_060--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_003645_060--Hb_004267_040 Hb_001655_030 Hb_001655_030 Hb_003645_060--Hb_001655_030 Hb_003645_060--Hb_000603_030 Hb_010174_040 Hb_010174_040 Hb_003645_060--Hb_010174_040 Hb_000035_170 Hb_000035_170 Hb_003645_060--Hb_000035_170 Hb_000579_230 Hb_000579_230 Hb_001754_040--Hb_000579_230 Hb_000395_070 Hb_000395_070 Hb_001754_040--Hb_000395_070 Hb_004676_010 Hb_004676_010 Hb_001754_040--Hb_004676_010 Hb_011618_090 Hb_011618_090 Hb_001754_040--Hb_011618_090 Hb_000789_250 Hb_000789_250 Hb_001754_040--Hb_000789_250 Hb_140049_080 Hb_140049_080 Hb_001754_040--Hb_140049_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.539329 0.727705 0.915112 0.411154 0.689031 1.01915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.325687 0.192202 0.578464 1.05689 0.678753

CAGE analysis