Hb_008120_010

Information

Type -
Description -
Location Contig8120: 28746-37078
Sequence    

Annotation

kegg
ID rcu:RCOM_0564770
description RNA-binding protein, putative
nr
ID XP_011006710.1
description PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
swissprot
ID Q9LRR6
description Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana GN=CID9 PE=3 SV=1
trembl
ID B9SVC9
description RNA-binding protein, putative (Fragment) OS=Ricinus communis GN=RCOM_0564770 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein-interacting protein 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59279: 19512-37209
cDNA
(Sanger)
(ID:Location)		 003_K23.ab1: 35442-37209 , 029_B06.ab1: 36505-37205

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008120_010 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
2 Hb_011671_040 0.0774322159 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
3 Hb_009049_020 0.0784625771 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
4 Hb_000107_200 0.0806390835 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
5 Hb_002828_020 0.0809465421 - - protein binding protein, putative [Ricinus communis]
6 Hb_002445_120 0.0895278814 - - secretory carrier membrane protein, putative [Ricinus communis]
7 Hb_007403_060 0.0942014663 - - PREDICTED: CAAX prenyl protease 2 [Jatropha curcas]
8 Hb_004127_030 0.0999077296 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
9 Hb_001018_130 0.1003394538 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
10 Hb_000146_050 0.1009214778 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
11 Hb_001677_080 0.1010770318 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
12 Hb_000260_170 0.1023975056 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
13 Hb_001492_020 0.1038705494 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
14 Hb_158062_010 0.1038771041 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
15 Hb_001454_130 0.1056889216 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
16 Hb_150986_010 0.1077590464 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002671_100 0.1086785537 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
18 Hb_032050_040 0.1089503323 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
19 Hb_000270_490 0.1091457193 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
20 Hb_002235_170 0.109335633 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]

Gene co-expression network

sample Hb_008120_010 Hb_008120_010 Hb_011671_040 Hb_011671_040 Hb_008120_010--Hb_011671_040 Hb_009049_020 Hb_009049_020 Hb_008120_010--Hb_009049_020 Hb_000107_200 Hb_000107_200 Hb_008120_010--Hb_000107_200 Hb_002828_020 Hb_002828_020 Hb_008120_010--Hb_002828_020 Hb_002445_120 Hb_002445_120 Hb_008120_010--Hb_002445_120 Hb_007403_060 Hb_007403_060 Hb_008120_010--Hb_007403_060 Hb_000025_470 Hb_000025_470 Hb_011671_040--Hb_000025_470 Hb_008748_040 Hb_008748_040 Hb_011671_040--Hb_008748_040 Hb_004127_030 Hb_004127_030 Hb_011671_040--Hb_004127_030 Hb_000270_490 Hb_000270_490 Hb_011671_040--Hb_000270_490 Hb_003688_130 Hb_003688_130 Hb_011671_040--Hb_003688_130 Hb_000208_260 Hb_000208_260 Hb_009049_020--Hb_000208_260 Hb_002398_030 Hb_002398_030 Hb_009049_020--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_009049_020--Hb_000445_050 Hb_058999_030 Hb_058999_030 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090 Hb_001018_130 Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_000107_200--Hb_002445_120 Hb_002067_120 Hb_002067_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_001500_110 Hb_001500_110 Hb_002828_020--Hb_001500_110 Hb_002876_320 Hb_002876_320 Hb_002828_020--Hb_002876_320 Hb_001677_080 Hb_001677_080 Hb_002828_020--Hb_001677_080 Hb_001492_020 Hb_001492_020 Hb_002828_020--Hb_001492_020 Hb_000683_070 Hb_000683_070 Hb_002828_020--Hb_000683_070 Hb_003777_310 Hb_003777_310 Hb_002445_120--Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_002445_120--Hb_000318_290 Hb_000056_260 Hb_000056_260 Hb_002445_120--Hb_000056_260 Hb_001633_130 Hb_001633_130 Hb_002445_120--Hb_001633_130 Hb_044736_010 Hb_044736_010 Hb_002445_120--Hb_044736_010 Hb_007403_060--Hb_011671_040 Hb_003940_040 Hb_003940_040 Hb_007403_060--Hb_003940_040 Hb_007403_060--Hb_000270_490 Hb_000808_280 Hb_000808_280 Hb_007403_060--Hb_000808_280 Hb_000120_060 Hb_000120_060 Hb_007403_060--Hb_000120_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.92774 4.97182 7.40458 17.4145 11.2598 16.2532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3008 6.20388 7.01819 8.03765 6.18829

CAGE analysis