Hb_008120_030

Information

Type -
Description -
Location Contig8120: 65265-79593
Sequence    

Annotation

kegg
ID csv:101216675
description uncharacterized LOC101216675
nr
ID XP_004147756.1
description PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
swissprot
ID Q5RAJ6
description DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1
trembl
ID A0A0A0KYT7
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59282: 65193-65330 , PASA_asmbl_59284: 65384-79605 , PASA_asmbl_59285: 70851-71071 , PASA_asmbl_59287: 77437-77841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008120_030 0.0 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
2 Hb_002398_030 0.0452110531 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_001635_160 0.0570080965 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
4 Hb_011310_210 0.0591134763 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
5 Hb_000777_050 0.0675792293 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
6 Hb_003549_090 0.0690500685 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
7 Hb_000345_380 0.0695367741 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
8 Hb_000445_050 0.0703834558 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
9 Hb_000035_110 0.0707927424 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
10 Hb_001635_040 0.0751341015 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
11 Hb_002876_320 0.0759893117 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
12 Hb_058999_030 0.0767367366 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
13 Hb_033642_030 0.0771759238 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
14 Hb_002942_060 0.0793650426 - - RNA-binding protein, putative [Ricinus communis]
15 Hb_001051_080 0.0803727989 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
16 Hb_000617_100 0.0807709209 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
17 Hb_002272_130 0.0808462951 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
18 Hb_002684_040 0.0821932513 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
19 Hb_007592_030 0.0835543371 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_005460_050 0.0847992145 - - COR413-PM2, putative [Ricinus communis]

Gene co-expression network

sample Hb_008120_030 Hb_008120_030 Hb_002398_030 Hb_002398_030 Hb_008120_030--Hb_002398_030 Hb_001635_160 Hb_001635_160 Hb_008120_030--Hb_001635_160 Hb_011310_210 Hb_011310_210 Hb_008120_030--Hb_011310_210 Hb_000777_050 Hb_000777_050 Hb_008120_030--Hb_000777_050 Hb_003549_090 Hb_003549_090 Hb_008120_030--Hb_003549_090 Hb_000345_380 Hb_000345_380 Hb_008120_030--Hb_000345_380 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_002398_030--Hb_001635_160 Hb_005460_050 Hb_005460_050 Hb_001635_160--Hb_005460_050 Hb_001635_160--Hb_000035_110 Hb_105328_020 Hb_105328_020 Hb_001635_160--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_001635_160--Hb_001377_310 Hb_011310_210--Hb_000777_050 Hb_011310_210--Hb_003549_090 Hb_002942_050 Hb_002942_050 Hb_011310_210--Hb_002942_050 Hb_011310_130 Hb_011310_130 Hb_011310_210--Hb_011310_130 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_001635_040 Hb_001635_040 Hb_000777_050--Hb_001635_040 Hb_000777_050--Hb_002942_050 Hb_003549_090--Hb_011310_130 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_003549_090--Hb_058999_030 Hb_000345_380--Hb_105328_020 Hb_011037_030 Hb_011037_030 Hb_000345_380--Hb_011037_030 Hb_000030_190 Hb_000030_190 Hb_000345_380--Hb_000030_190 Hb_000789_310 Hb_000789_310 Hb_000345_380--Hb_000789_310 Hb_008406_200 Hb_008406_200 Hb_000345_380--Hb_008406_200 Hb_001409_020 Hb_001409_020 Hb_000345_380--Hb_001409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9201 7.93039 10.4376 10.7327 8.78055 15.0009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48855 5.99621 7.88527 7.08441 6.18666

CAGE analysis