Hb_008143_020

Information

Type -
Description -
Location Contig8143: 24464-28064
Sequence    

Annotation

kegg
ID rcu:RCOM_0203460
description KOM, putative (EC:3.4.21.105)
nr
ID XP_012092564.1
description PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
swissprot
ID Q6GMF8
description Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
trembl
ID A0A067JKB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05305 PE=4 SV=1
Gene Ontology
ID GO:0005794
description inactive rhomboid protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008143_020 0.0 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
2 Hb_000340_060 0.1002246269 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001004_010 0.1145682764 - - conserved hypothetical protein [Ricinus communis]
4 Hb_097007_020 0.1278066149 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
5 Hb_012496_010 0.1320735613 - - kinase, putative [Ricinus communis]
6 Hb_006907_020 0.1334999634 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
7 Hb_000422_050 0.1364910243 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
8 Hb_009476_010 0.1379817794 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
9 Hb_035677_010 0.1462448358 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000571_030 0.1477172297 - - ammonium transporter, putative [Ricinus communis]
11 Hb_001257_040 0.14832308 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
12 Hb_002849_030 0.1498240135 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
13 Hb_000127_220 0.1509068274 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
14 Hb_000836_310 0.1509677848 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
15 Hb_000175_250 0.1544550692 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
16 Hb_003375_080 0.1555678986 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
17 Hb_000247_150 0.1561054769 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
18 Hb_113396_020 0.1571088432 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
19 Hb_029622_080 0.1590943666 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
20 Hb_011287_020 0.1602842648 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008143_020 Hb_008143_020 Hb_000340_060 Hb_000340_060 Hb_008143_020--Hb_000340_060 Hb_001004_010 Hb_001004_010 Hb_008143_020--Hb_001004_010 Hb_097007_020 Hb_097007_020 Hb_008143_020--Hb_097007_020 Hb_012496_010 Hb_012496_010 Hb_008143_020--Hb_012496_010 Hb_006907_020 Hb_006907_020 Hb_008143_020--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_008143_020--Hb_000422_050 Hb_001257_040 Hb_001257_040 Hb_000340_060--Hb_001257_040 Hb_000836_310 Hb_000836_310 Hb_000340_060--Hb_000836_310 Hb_004032_220 Hb_004032_220 Hb_000340_060--Hb_004032_220 Hb_000127_220 Hb_000127_220 Hb_000340_060--Hb_000127_220 Hb_007858_020 Hb_007858_020 Hb_000340_060--Hb_007858_020 Hb_001004_010--Hb_012496_010 Hb_113396_020 Hb_113396_020 Hb_001004_010--Hb_113396_020 Hb_001004_010--Hb_006907_020 Hb_001004_010--Hb_000422_050 Hb_001004_010--Hb_000340_060 Hb_035677_010 Hb_035677_010 Hb_097007_020--Hb_035677_010 Hb_004899_360 Hb_004899_360 Hb_097007_020--Hb_004899_360 Hb_000247_150 Hb_000247_150 Hb_097007_020--Hb_000247_150 Hb_097007_020--Hb_012496_010 Hb_097007_020--Hb_006907_020 Hb_000571_030 Hb_000571_030 Hb_097007_020--Hb_000571_030 Hb_012496_010--Hb_035677_010 Hb_012496_010--Hb_113396_020 Hb_012496_010--Hb_000836_310 Hb_012496_010--Hb_000127_220 Hb_012496_010--Hb_006907_020 Hb_012496_010--Hb_000422_050 Hb_029664_010 Hb_029664_010 Hb_006907_020--Hb_029664_010 Hb_006907_020--Hb_035677_010 Hb_006907_020--Hb_004899_360 Hb_000322_020 Hb_000322_020 Hb_000422_050--Hb_000322_020 Hb_000422_050--Hb_001257_040 Hb_004586_120 Hb_004586_120 Hb_000422_050--Hb_004586_120 Hb_002849_030 Hb_002849_030 Hb_000422_050--Hb_002849_030 Hb_000422_050--Hb_000127_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0193967 1.30892 0.428342 0.170626 0.0156163 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0355386 0 0 0.0111779 0.116393

CAGE analysis