Hb_008143_030

Information

Type -
Description -
Location Contig8143: 42185-51352
Sequence    

Annotation

kegg
ID vvi:100253495
description uncharacterized LOC100253495
nr
ID XP_012092563.1
description PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067JLS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05304 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59308: 42409-45798 , PASA_asmbl_59309: 45817-51826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008143_030 0.0 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
2 Hb_001584_290 0.0495704674 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
3 Hb_108216_040 0.0646297558 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
4 Hb_000035_040 0.0648837023 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
5 Hb_000640_320 0.0654175317 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
6 Hb_000104_080 0.0662052978 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
7 Hb_002652_040 0.0688963639 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
8 Hb_002043_170 0.0697557075 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
9 Hb_003006_060 0.0714199377 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
10 Hb_000424_010 0.0746506833 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
11 Hb_002587_020 0.076433195 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000714_050 0.0771776761 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
13 Hb_001235_200 0.0772428396 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006449_050 0.077887905 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
15 Hb_010222_080 0.0794710202 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
16 Hb_046615_020 0.0814265494 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
17 Hb_000320_200 0.0829264984 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
18 Hb_031754_010 0.0832350596 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
19 Hb_000139_250 0.0832376192 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
20 Hb_002400_180 0.0834569766 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008143_030 Hb_008143_030 Hb_001584_290 Hb_001584_290 Hb_008143_030--Hb_001584_290 Hb_108216_040 Hb_108216_040 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_000104_080 Hb_000104_080 Hb_008143_030--Hb_000104_080 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040 Hb_010222_080 Hb_010222_080 Hb_001584_290--Hb_010222_080 Hb_001584_290--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_001584_290--Hb_002587_020 Hb_000923_040 Hb_000923_040 Hb_001584_290--Hb_000923_040 Hb_000640_220 Hb_000640_220 Hb_001584_290--Hb_000640_220 Hb_000100_070 Hb_000100_070 Hb_108216_040--Hb_000100_070 Hb_108216_040--Hb_000640_320 Hb_000207_310 Hb_000207_310 Hb_108216_040--Hb_000207_310 Hb_000116_180 Hb_000116_180 Hb_108216_040--Hb_000116_180 Hb_002400_180 Hb_002400_180 Hb_108216_040--Hb_002400_180 Hb_000035_040--Hb_002652_040 Hb_000424_010 Hb_000424_010 Hb_000035_040--Hb_000424_010 Hb_031754_010 Hb_031754_010 Hb_000035_040--Hb_031754_010 Hb_000331_190 Hb_000331_190 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_002043_170 Hb_002043_170 Hb_000035_040--Hb_002043_170 Hb_000640_320--Hb_002043_170 Hb_000714_050 Hb_000714_050 Hb_000640_320--Hb_000714_050 Hb_000640_320--Hb_002400_180 Hb_000343_210 Hb_000343_210 Hb_000640_320--Hb_000343_210 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020 Hb_002652_040--Hb_000331_190 Hb_002652_040--Hb_000424_010 Hb_125092_020 Hb_125092_020 Hb_002652_040--Hb_125092_020 Hb_002883_010 Hb_002883_010 Hb_002652_040--Hb_002883_010 Hb_175338_020 Hb_175338_020 Hb_002652_040--Hb_175338_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.7285 29.2629 25.4761 19.8441 96.7397 75.0241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.7652 26.4337 33.4375 29.8912 30.7853

CAGE analysis