Hb_008143_040

Information

Type -
Description -
Location Contig8143: 63120-65126
Sequence    

Annotation

kegg
ID rcu:RCOM_0203470
description Alpha-expansin 4 precursor, putative
nr
ID XP_002533097.1
description Alpha-expansin 4 precursor, putative [Ricinus communis]
swissprot
ID O48818
description Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1
trembl
ID B9T4C8
description Alpha-expansin 4, putative OS=Ricinus communis GN=RCOM_0203470 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59314: 63621-64886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008143_040 0.0 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
2 Hb_007416_290 0.1162727653 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
3 Hb_009545_030 0.1203433156 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
4 Hb_007134_030 0.1256556726 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
5 Hb_117639_010 0.1434078986 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
6 Hb_000057_100 0.1515567654 - - Peroxidase 57 precursor, putative [Ricinus communis]
7 Hb_000115_250 0.1670709498 - - PREDICTED: endonuclease 2 [Jatropha curcas]
8 Hb_000165_200 0.1708606633 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_000970_020 0.1722608529 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
10 Hb_001675_040 0.1740451216 - - conserved hypothetical protein [Ricinus communis]
11 Hb_022250_160 0.174435163 - - respiratory burst oxidase A [Manihot esculenta]
12 Hb_000110_290 0.1751958233 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001159_170 0.1764580952 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
14 Hb_000946_070 0.1779119459 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_004545_070 0.1845344697 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
16 Hb_007590_100 0.1850857997 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
17 Hb_000186_290 0.1851511857 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
18 Hb_004667_030 0.1888231031 - - hypothetical protein VITISV_034568 [Vitis vinifera]
19 Hb_001916_030 0.1893131746 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
20 Hb_004032_110 0.1928215632 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008143_040 Hb_008143_040 Hb_007416_290 Hb_007416_290 Hb_008143_040--Hb_007416_290 Hb_009545_030 Hb_009545_030 Hb_008143_040--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_008143_040--Hb_007134_030 Hb_117639_010 Hb_117639_010 Hb_008143_040--Hb_117639_010 Hb_000057_100 Hb_000057_100 Hb_008143_040--Hb_000057_100 Hb_000115_250 Hb_000115_250 Hb_008143_040--Hb_000115_250 Hb_022250_160 Hb_022250_160 Hb_007416_290--Hb_022250_160 Hb_007416_290--Hb_009545_030 Hb_007416_290--Hb_007134_030 Hb_004079_100 Hb_004079_100 Hb_007416_290--Hb_004079_100 Hb_000946_070 Hb_000946_070 Hb_007416_290--Hb_000946_070 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_009545_030--Hb_007134_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030 Hb_187959_010 Hb_187959_010 Hb_007134_030--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007134_030--Hb_004032_110 Hb_001439_010 Hb_001439_010 Hb_007134_030--Hb_001439_010 Hb_117639_010--Hb_000057_100 Hb_007875_020 Hb_007875_020 Hb_117639_010--Hb_007875_020 Hb_000337_030 Hb_000337_030 Hb_117639_010--Hb_000337_030 Hb_117639_010--Hb_022250_160 Hb_005663_090 Hb_005663_090 Hb_117639_010--Hb_005663_090 Hb_000057_100--Hb_000946_070 Hb_001488_350 Hb_001488_350 Hb_000057_100--Hb_001488_350 Hb_000181_220 Hb_000181_220 Hb_000057_100--Hb_000181_220 Hb_143766_070 Hb_143766_070 Hb_000057_100--Hb_143766_070 Hb_005976_010 Hb_005976_010 Hb_000115_250--Hb_005976_010 Hb_004957_050 Hb_004957_050 Hb_000115_250--Hb_004957_050 Hb_000580_110 Hb_000580_110 Hb_000115_250--Hb_000580_110 Hb_007590_100 Hb_007590_100 Hb_000115_250--Hb_007590_100 Hb_029223_040 Hb_029223_040 Hb_000115_250--Hb_029223_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.271963 9.33212 27.3929 93.1728 0.151909 0.0565488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61896 15.7951 3.43224 79.3419 56.0633

CAGE analysis