Hb_008147_010

Information

Type -
Description -
Location Contig8147: 4246-8431
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008147_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_004321_010 0.1263360448 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_135624_010 0.2687941446 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
4 Hb_001009_130 0.2854321092 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
5 Hb_006344_010 0.2865443774 - - -
6 Hb_003540_130 0.3169152615 - - -
7 Hb_001021_060 0.3188410251 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003747_130 0.3227747215 - - -
9 Hb_004413_030 0.3264776456 - - Retrotransposon protein, putative [Theobroma cacao]
10 Hb_062244_010 0.3272452966 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000922_130 0.3354985534 - - hypothetical protein POPTR_0008s04925g [Populus trichocarpa]
12 Hb_000453_220 0.3358673123 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
13 Hb_005914_240 0.3388153529 - - PREDICTED: oxidation resistance protein 1 [Jatropha curcas]
14 Hb_030630_010 0.3395240613 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
15 Hb_000370_010 0.3395425529 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000204_200 0.3401960023 - - hypothetical protein VITISV_019818 [Vitis vinifera]
17 Hb_009474_010 0.3446788064 - - -
18 Hb_007768_030 0.3467988206 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_003446_040 0.3532953561 - - -
20 Hb_003752_050 0.3541746782 - - hypothetical protein JCGZ_15078 [Jatropha curcas]

Gene co-expression network

sample Hb_008147_010 Hb_008147_010 Hb_004321_010 Hb_004321_010 Hb_008147_010--Hb_004321_010 Hb_135624_010 Hb_135624_010 Hb_008147_010--Hb_135624_010 Hb_001009_130 Hb_001009_130 Hb_008147_010--Hb_001009_130 Hb_006344_010 Hb_006344_010 Hb_008147_010--Hb_006344_010 Hb_003540_130 Hb_003540_130 Hb_008147_010--Hb_003540_130 Hb_001021_060 Hb_001021_060 Hb_008147_010--Hb_001021_060 Hb_005078_030 Hb_005078_030 Hb_004321_010--Hb_005078_030 Hb_004757_030 Hb_004757_030 Hb_004321_010--Hb_004757_030 Hb_002357_050 Hb_002357_050 Hb_004321_010--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_004321_010--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_004321_010--Hb_005357_090 Hb_062244_010 Hb_062244_010 Hb_135624_010--Hb_062244_010 Hb_004413_030 Hb_004413_030 Hb_135624_010--Hb_004413_030 Hb_135624_010--Hb_001009_130 Hb_005532_010 Hb_005532_010 Hb_135624_010--Hb_005532_010 Hb_000144_140 Hb_000144_140 Hb_135624_010--Hb_000144_140 Hb_135624_010--Hb_006344_010 Hb_001009_130--Hb_062244_010 Hb_001009_130--Hb_004413_030 Hb_001009_130--Hb_000144_140 Hb_001277_310 Hb_001277_310 Hb_001009_130--Hb_001277_310 Hb_003446_040 Hb_003446_040 Hb_001009_130--Hb_003446_040 Hb_140572_010 Hb_140572_010 Hb_006344_010--Hb_140572_010 Hb_006344_010--Hb_001021_060 Hb_001195_390 Hb_001195_390 Hb_006344_010--Hb_001195_390 Hb_006344_010--Hb_004413_030 Hb_006344_010--Hb_001277_310 Hb_000590_040 Hb_000590_040 Hb_003540_130--Hb_000590_040 Hb_000483_420 Hb_000483_420 Hb_003540_130--Hb_000483_420 Hb_001004_040 Hb_001004_040 Hb_003540_130--Hb_001004_040 Hb_085863_020 Hb_085863_020 Hb_003540_130--Hb_085863_020 Hb_003747_130 Hb_003747_130 Hb_003540_130--Hb_003747_130 Hb_019654_080 Hb_019654_080 Hb_003540_130--Hb_019654_080 Hb_001021_060--Hb_140572_010 Hb_000252_030 Hb_000252_030 Hb_001021_060--Hb_000252_030 Hb_003952_140 Hb_003952_140 Hb_001021_060--Hb_003952_140 Hb_005914_240 Hb_005914_240 Hb_001021_060--Hb_005914_240 Hb_007753_020 Hb_007753_020 Hb_001021_060--Hb_007753_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0477183 0 0 0 0 0.0540082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.12749 0 0

CAGE analysis