Hb_008147_020

Information

Type -
Description -
Location Contig8147: 13980-14627
Sequence    

Annotation

kegg
ID vvi:104881612
description uncharacterized LOC104881612
nr
ID KDP24356.1
description hypothetical protein JCGZ_25652 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JK47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25652 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59328: 14035-14779
cDNA
(Sanger)
(ID:Location)		 007_P08.ab1: 14170-14753 , 012_I10.ab1: 14035-14779 , 021_D17.ab1: 14035-14779 , 040_H13.ab1: 14170-14753

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008147_020 0.0 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
2 Hb_002043_020 0.0298950552 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
3 Hb_002078_330 0.0491712413 - - lipid binding protein, putative [Ricinus communis]
4 Hb_002704_060 0.053254135 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
5 Hb_001206_110 0.0556381281 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
6 Hb_001031_140 0.0600233649 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
7 Hb_000058_180 0.0644435679 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
8 Hb_008021_060 0.0651403601 - - Squalene monooxygenase, putative [Ricinus communis]
9 Hb_001652_100 0.0677163112 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
10 Hb_001728_070 0.0680695682 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
11 Hb_001141_180 0.0685989897 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
12 Hb_000538_090 0.0695123238 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
13 Hb_001642_020 0.070222634 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
14 Hb_012035_010 0.0729075476 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
15 Hb_000777_080 0.0741827137 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
16 Hb_041433_010 0.0748151717 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
17 Hb_143629_180 0.0754451844 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
18 Hb_000985_160 0.0771678484 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
19 Hb_034235_010 0.0777848181 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_001789_220 0.078077606 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]

Gene co-expression network

sample Hb_008147_020 Hb_008147_020 Hb_002043_020 Hb_002043_020 Hb_008147_020--Hb_002043_020 Hb_002078_330 Hb_002078_330 Hb_008147_020--Hb_002078_330 Hb_002704_060 Hb_002704_060 Hb_008147_020--Hb_002704_060 Hb_001206_110 Hb_001206_110 Hb_008147_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_008147_020--Hb_001031_140 Hb_000058_180 Hb_000058_180 Hb_008147_020--Hb_000058_180 Hb_002043_020--Hb_002078_330 Hb_002043_020--Hb_001206_110 Hb_002043_020--Hb_001031_140 Hb_000557_070 Hb_000557_070 Hb_002043_020--Hb_000557_070 Hb_001141_180 Hb_001141_180 Hb_002043_020--Hb_001141_180 Hb_002078_330--Hb_002704_060 Hb_143629_180 Hb_143629_180 Hb_002078_330--Hb_143629_180 Hb_000538_090 Hb_000538_090 Hb_002078_330--Hb_000538_090 Hb_034235_010 Hb_034235_010 Hb_002078_330--Hb_034235_010 Hb_002704_060--Hb_002043_020 Hb_002704_060--Hb_034235_010 Hb_002704_060--Hb_000538_090 Hb_002704_060--Hb_143629_180 Hb_001728_070 Hb_001728_070 Hb_001206_110--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001206_110--Hb_000777_080 Hb_088689_010 Hb_088689_010 Hb_001206_110--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_001206_110--Hb_008173_160 Hb_007894_200 Hb_007894_200 Hb_001206_110--Hb_007894_200 Hb_002973_100 Hb_002973_100 Hb_001206_110--Hb_002973_100 Hb_001031_140--Hb_001141_180 Hb_001642_020 Hb_001642_020 Hb_001031_140--Hb_001642_020 Hb_001031_140--Hb_001728_070 Hb_016734_100 Hb_016734_100 Hb_001031_140--Hb_016734_100 Hb_001031_140--Hb_001206_110 Hb_001652_100 Hb_001652_100 Hb_000058_180--Hb_001652_100 Hb_007922_030 Hb_007922_030 Hb_000058_180--Hb_007922_030 Hb_000058_180--Hb_000538_090 Hb_008021_060 Hb_008021_060 Hb_000058_180--Hb_008021_060 Hb_000058_180--Hb_001642_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.559533 55.0085 31.905 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.445508 41.6014

CAGE analysis