Hb_008147_030

Information

Type -
Description -
Location Contig8147: 18462-24437
Sequence    

Annotation

kegg
ID rcu:RCOM_1167650
description ubiquitin-protein ligase, putative
nr
ID XP_012088139.1
description PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
swissprot
ID O04251
description BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana GN=At4g02110 PE=3 SV=3
trembl
ID A0A067JWH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25651 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein brct domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59329: 22652-24610 , PASA_asmbl_59330: 25417-32678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008147_030 0.0 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
2 Hb_000548_010 0.1346017174 - - -
3 Hb_001268_230 0.1499670337 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_141838_010 0.1615190858 - - -
5 Hb_003320_030 0.1786531113 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031862_170 0.178699097 - - immunophilin, putative [Ricinus communis]
7 Hb_004460_020 0.1812766175 - - chaperone protein DNAj, putative [Ricinus communis]
8 Hb_001146_070 0.1823688588 transcription factor TF Family: bHLH LMYC2 [Hevea brasiliensis]
9 Hb_098315_110 0.1842141719 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004102_130 0.1850419021 - - conserved hypothetical protein [Ricinus communis]
11 Hb_023610_010 0.1850633558 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002759_130 0.1871312137 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002232_290 0.1885863306 - - -
14 Hb_005568_070 0.1941467762 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
15 Hb_001767_020 0.1958626825 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
16 Hb_022749_030 0.1972982136 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
17 Hb_004648_040 0.199582189 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
18 Hb_002903_120 0.2006776847 - - -
19 Hb_156144_020 0.2012409337 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
20 Hb_053543_010 0.2012894964 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008147_030 Hb_008147_030 Hb_000548_010 Hb_000548_010 Hb_008147_030--Hb_000548_010 Hb_001268_230 Hb_001268_230 Hb_008147_030--Hb_001268_230 Hb_141838_010 Hb_141838_010 Hb_008147_030--Hb_141838_010 Hb_003320_030 Hb_003320_030 Hb_008147_030--Hb_003320_030 Hb_031862_170 Hb_031862_170 Hb_008147_030--Hb_031862_170 Hb_004460_020 Hb_004460_020 Hb_008147_030--Hb_004460_020 Hb_000548_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_000548_010--Hb_156144_020 Hb_001146_070 Hb_001146_070 Hb_000548_010--Hb_001146_070 Hb_000548_010--Hb_001268_230 Hb_001017_100 Hb_001017_100 Hb_000548_010--Hb_001017_100 Hb_004648_040 Hb_004648_040 Hb_001268_230--Hb_004648_040 Hb_098315_110 Hb_098315_110 Hb_001268_230--Hb_098315_110 Hb_000317_080 Hb_000317_080 Hb_001268_230--Hb_000317_080 Hb_001628_110 Hb_001628_110 Hb_001268_230--Hb_001628_110 Hb_053543_010 Hb_053543_010 Hb_001268_230--Hb_053543_010 Hb_000300_530 Hb_000300_530 Hb_001268_230--Hb_000300_530 Hb_011515_030 Hb_011515_030 Hb_141838_010--Hb_011515_030 Hb_002983_100 Hb_002983_100 Hb_141838_010--Hb_002983_100 Hb_141838_010--Hb_003320_030 Hb_004092_010 Hb_004092_010 Hb_141838_010--Hb_004092_010 Hb_002903_120 Hb_002903_120 Hb_141838_010--Hb_002903_120 Hb_003320_030--Hb_002983_100 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_005116_020 Hb_005116_020 Hb_003320_030--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_003320_030--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_003320_030--Hb_000038_150 Hb_134732_010 Hb_134732_010 Hb_003320_030--Hb_134732_010 Hb_005568_070 Hb_005568_070 Hb_031862_170--Hb_005568_070 Hb_004102_130 Hb_004102_130 Hb_031862_170--Hb_004102_130 Hb_000156_030 Hb_000156_030 Hb_031862_170--Hb_000156_030 Hb_000590_080 Hb_000590_080 Hb_031862_170--Hb_000590_080 Hb_003673_020 Hb_003673_020 Hb_031862_170--Hb_003673_020 Hb_004032_460 Hb_004032_460 Hb_031862_170--Hb_004032_460 Hb_001767_020 Hb_001767_020 Hb_004460_020--Hb_001767_020 Hb_004460_020--Hb_004102_130 Hb_004460_020--Hb_000038_150 Hb_004460_020--Hb_001159_210 Hb_004460_020--Hb_001268_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5476 0.38364 1.20365 0.45494 50.342 23.349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80031 1.15255 11.1331 1.61098 0.10759

CAGE analysis