Hb_008147_090

Information

Type -
Description -
Location Contig8147: 58850-70637
Sequence    

Annotation

kegg
ID rcu:RCOM_1569850
description hypothetical protein
nr
ID XP_002521204.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FVR6
description Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=2 SV=1
trembl
ID B9S5D5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1569850 PE=4 SV=1
Gene Ontology
ID GO:0008152
description nad -binding rossmann-fold superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59340: 58946-70561 , PASA_asmbl_59341: 59065-70553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008147_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_180343_010 0.0707094741 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
3 Hb_000029_070 0.0743923862 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
4 Hb_000127_140 0.077722449 - - transporter-related family protein [Populus trichocarpa]
5 Hb_002392_010 0.0889043721 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
6 Hb_001195_060 0.0912148323 - - Protein yrdA, putative [Ricinus communis]
7 Hb_002184_090 0.0926710887 - - DNA binding protein, putative [Ricinus communis]
8 Hb_045003_010 0.093071445 - - Stomatin-1, putative [Ricinus communis]
9 Hb_001353_010 0.0946031468 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
10 Hb_001489_110 0.0959909492 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
11 Hb_166574_010 0.0960868517 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
12 Hb_007894_010 0.0974400792 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
13 Hb_002110_100 0.0977047328 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
14 Hb_000392_340 0.0998778444 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
15 Hb_066842_010 0.0999653774 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
16 Hb_004257_010 0.1001387094 - - CMP-sialic acid transporter, putative [Ricinus communis]
17 Hb_002042_150 0.1009531404 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
18 Hb_000329_210 0.1015547843 - - Golgi snare 12 isoform 1 [Theobroma cacao]
19 Hb_185255_010 0.1035165459 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
20 Hb_010368_050 0.1035489225 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]

Gene co-expression network

sample Hb_008147_090 Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_008147_090--Hb_180343_010 Hb_000029_070 Hb_000029_070 Hb_008147_090--Hb_000029_070 Hb_000127_140 Hb_000127_140 Hb_008147_090--Hb_000127_140 Hb_002392_010 Hb_002392_010 Hb_008147_090--Hb_002392_010 Hb_001195_060 Hb_001195_060 Hb_008147_090--Hb_001195_060 Hb_002184_090 Hb_002184_090 Hb_008147_090--Hb_002184_090 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_000392_340 Hb_000392_340 Hb_180343_010--Hb_000392_340 Hb_021409_080 Hb_021409_080 Hb_180343_010--Hb_021409_080 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110 Hb_180343_010--Hb_002184_090 Hb_000768_210 Hb_000768_210 Hb_000029_070--Hb_000768_210 Hb_001865_090 Hb_001865_090 Hb_000029_070--Hb_001865_090 Hb_002518_210 Hb_002518_210 Hb_000029_070--Hb_002518_210 Hb_045003_010 Hb_045003_010 Hb_000029_070--Hb_045003_010 Hb_000029_070--Hb_000127_140 Hb_007894_010 Hb_007894_010 Hb_000127_140--Hb_007894_010 Hb_001951_130 Hb_001951_130 Hb_000127_140--Hb_001951_130 Hb_000127_140--Hb_001195_060 Hb_000666_100 Hb_000666_100 Hb_000127_140--Hb_000666_100 Hb_000127_140--Hb_002184_090 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_005167_010 Hb_005167_010 Hb_001195_060--Hb_005167_010 Hb_000920_200 Hb_000920_200 Hb_001195_060--Hb_000920_200 Hb_005765_050 Hb_005765_050 Hb_001195_060--Hb_005765_050 Hb_012799_170 Hb_012799_170 Hb_001195_060--Hb_012799_170 Hb_004545_110 Hb_004545_110 Hb_001195_060--Hb_004545_110 Hb_002184_090--Hb_001195_060 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84677 2.15738 9.51427 16.5183 3.06496 5.92114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.02716 11.3501 7.62484 6.62292 9.60335

CAGE analysis