Hb_008165_010

Information

Type -
Description -
Location Contig8165: 30310-31113
Sequence    

Annotation

kegg
ID sly:101261588
description 36.4 kDa proline-rich protein
nr
ID XP_004251730.1
description PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
swissprot
ID Q00451
description 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1
trembl
ID K4DC53
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc12g009650.1 PE=4 SV=1
Gene Ontology
ID GO:0009506
description kda proline-rich

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59436: 30261-30788
cDNA
(Sanger)
(ID:Location)		 003_N09.ab1: 30246-30843 , 003_O20.ab1: 30235-30951 , 005_H03.ab1: 30235-30889 , 024_G09.ab1: 30240-30875 , 041_G05.ab1: 30238-30989 , 047_E17.ab1: 30235-30953 , 050_N11.ab1: 30235-30917 , 050_P06.ab1: 20363-31659

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008165_010 0.0 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
2 Hb_000436_110 0.0384168711 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
3 Hb_102900_010 0.0408693039 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
4 Hb_018663_010 0.0415048946 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
5 Hb_010737_030 0.0460304251 - - unnamed protein product [Vitis vinifera]
6 Hb_002235_260 0.0618499936 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
7 Hb_004117_060 0.0632018363 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
8 Hb_000751_010 0.069976782 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003226_040 0.0708246389 - - PREDICTED: endoglucanase 17 [Populus euphratica]
10 Hb_000496_100 0.0736169994 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
11 Hb_000375_200 0.0798472272 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_102129_040 0.0829277478 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
13 Hb_000243_180 0.0829486081 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
14 Hb_000023_030 0.0853680756 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
15 Hb_003464_040 0.0899999776 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_031862_190 0.0915841335 - - -
17 Hb_012368_040 0.0930540357 - - conserved hypothetical protein [Ricinus communis]
18 Hb_019762_030 0.0943928786 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
19 Hb_001921_040 0.0950285719 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
20 Hb_001926_010 0.0952887007 - - hypothetical protein Csa_2G383910 [Cucumis sativus]

Gene co-expression network

sample Hb_008165_010 Hb_008165_010 Hb_000436_110 Hb_000436_110 Hb_008165_010--Hb_000436_110 Hb_102900_010 Hb_102900_010 Hb_008165_010--Hb_102900_010 Hb_018663_010 Hb_018663_010 Hb_008165_010--Hb_018663_010 Hb_010737_030 Hb_010737_030 Hb_008165_010--Hb_010737_030 Hb_002235_260 Hb_002235_260 Hb_008165_010--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_008165_010--Hb_004117_060 Hb_000436_110--Hb_010737_030 Hb_000436_110--Hb_102900_010 Hb_000436_110--Hb_018663_010 Hb_000751_010 Hb_000751_010 Hb_000436_110--Hb_000751_010 Hb_003226_040 Hb_003226_040 Hb_000436_110--Hb_003226_040 Hb_102900_010--Hb_000751_010 Hb_102900_010--Hb_010737_030 Hb_102129_040 Hb_102129_040 Hb_102900_010--Hb_102129_040 Hb_102900_010--Hb_018663_010 Hb_018663_010--Hb_010737_030 Hb_000375_200 Hb_000375_200 Hb_018663_010--Hb_000375_200 Hb_000496_100 Hb_000496_100 Hb_018663_010--Hb_000496_100 Hb_010737_030--Hb_000496_100 Hb_010737_030--Hb_000375_200 Hb_002235_260--Hb_004117_060 Hb_001921_040 Hb_001921_040 Hb_002235_260--Hb_001921_040 Hb_019762_030 Hb_019762_030 Hb_002235_260--Hb_019762_030 Hb_000023_030 Hb_000023_030 Hb_002235_260--Hb_000023_030 Hb_005198_010 Hb_005198_010 Hb_002235_260--Hb_005198_010 Hb_004117_060--Hb_000023_030 Hb_004117_060--Hb_001921_040 Hb_002045_020 Hb_002045_020 Hb_004117_060--Hb_002045_020 Hb_004117_060--Hb_019762_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0244266 486.79 81.8445 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0953993 0.0213333 71.569

CAGE analysis