Hb_008165_060

Information

Type -
Description -
Location Contig8165: 105744-110297
Sequence    

Annotation

kegg
ID rcu:RCOM_0272280
description hypothetical protein
nr
ID XP_012073997.1
description PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59454: 106072-107690 , PASA_asmbl_59455: 108352-109738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008165_060 0.0 - - PREDICTED: uncharacterized protein LOC105635541 [Jatropha curcas]
2 Hb_000205_190 0.0616399175 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_001158_070 0.0624426599 - - Protein DEK, putative [Ricinus communis]
4 Hb_000329_320 0.0715707175 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
5 Hb_001700_010 0.0813618014 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
6 Hb_000917_060 0.0871724015 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
7 Hb_005269_070 0.089909001 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
8 Hb_000866_260 0.0910078702 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
9 Hb_007075_040 0.0916953241 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
10 Hb_001322_140 0.0934596287 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
11 Hb_002235_250 0.094242756 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
12 Hb_000804_040 0.0944017841 - - protein with unknown function [Ricinus communis]
13 Hb_000866_010 0.0950060371 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005539_220 0.0950437462 - - spermidine synthase 1, putative [Ricinus communis]
15 Hb_000453_050 0.0955544451 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
16 Hb_029879_010 0.0972260185 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
17 Hb_000869_020 0.0973607426 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
18 Hb_002013_020 0.0974407576 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
19 Hb_000575_040 0.0991073131 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
20 Hb_002876_230 0.0994352803 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]

Gene co-expression network

sample Hb_008165_060 Hb_008165_060 Hb_000205_190 Hb_000205_190 Hb_008165_060--Hb_000205_190 Hb_001158_070 Hb_001158_070 Hb_008165_060--Hb_001158_070 Hb_000329_320 Hb_000329_320 Hb_008165_060--Hb_000329_320 Hb_001700_010 Hb_001700_010 Hb_008165_060--Hb_001700_010 Hb_000917_060 Hb_000917_060 Hb_008165_060--Hb_000917_060 Hb_005269_070 Hb_005269_070 Hb_008165_060--Hb_005269_070 Hb_000205_190--Hb_001158_070 Hb_004970_190 Hb_004970_190 Hb_000205_190--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_000205_190--Hb_000804_040 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_005000_190 Hb_005000_190 Hb_001158_070--Hb_005000_190 Hb_000010_400 Hb_000010_400 Hb_001158_070--Hb_000010_400 Hb_000603_280 Hb_000603_280 Hb_001158_070--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_001158_070--Hb_002843_120 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000329_320--Hb_000917_060 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260 Hb_000103_480 Hb_000103_480 Hb_001700_010--Hb_000103_480 Hb_000184_170 Hb_000184_170 Hb_001700_010--Hb_000184_170 Hb_000869_020 Hb_000869_020 Hb_001700_010--Hb_000869_020 Hb_001322_140 Hb_001322_140 Hb_001700_010--Hb_001322_140 Hb_001700_010--Hb_000205_190 Hb_000917_060--Hb_000866_260 Hb_017358_030 Hb_017358_030 Hb_000917_060--Hb_017358_030 Hb_032202_140 Hb_032202_140 Hb_000917_060--Hb_032202_140 Hb_001163_050 Hb_001163_050 Hb_000917_060--Hb_001163_050 Hb_002013_020 Hb_002013_020 Hb_000917_060--Hb_002013_020 Hb_156279_020 Hb_156279_020 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_002169_040 Hb_002169_040 Hb_005269_070--Hb_002169_040 Hb_000985_030 Hb_000985_030 Hb_005269_070--Hb_000985_030 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6693 6.77052 13.9096 6.80609 8.02986 14.1048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.57508 11.5973 15.7454 9.04965 11.0889

CAGE analysis