Hb_008173_020

Information

Type -
Description -
Location Contig8173: 6464-8907
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09270g
description POPTRDRAFT_709364; glutathione peroxidase family protein
nr
ID AKJ66815.1
description glutathione peroxidase [Populus euphratica]
swissprot
ID O23814
description Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1
trembl
ID A9PI44
description Glutathione peroxidase OS=Populus trichocarpa GN=POPTR_0001s09270g PE=2 SV=1
Gene Ontology
ID GO:0004602
description probable phospholipid hydroperoxide glutathione peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59459: 8416-8908
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_020 0.0 - - glutathione peroxidase [Populus euphratica]
2 Hb_000029_310 0.1048172978 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
3 Hb_000270_260 0.1184028367 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
4 Hb_001847_020 0.1368823368 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
5 Hb_017904_010 0.1377232955 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
6 Hb_111985_050 0.1384994162 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
7 Hb_000362_200 0.1387249027 - - exonuclease family protein [Populus trichocarpa]
8 Hb_000185_210 0.1389590111 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
9 Hb_012627_050 0.1392747472 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
10 Hb_003069_010 0.139485518 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
11 Hb_009421_020 0.1413193994 - - PREDICTED: caltractin-like [Jatropha curcas]
12 Hb_005186_050 0.1434270859 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
13 Hb_112798_030 0.1449452054 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000302_180 0.1474327275 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_032264_070 0.1477761107 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
16 Hb_001512_060 0.147937087 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
17 Hb_001292_020 0.1482812848 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
18 Hb_000329_320 0.1516995546 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
19 Hb_001934_030 0.1518617355 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
20 Hb_003020_020 0.1522847491 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008173_020 Hb_008173_020 Hb_000029_310 Hb_000029_310 Hb_008173_020--Hb_000029_310 Hb_000270_260 Hb_000270_260 Hb_008173_020--Hb_000270_260 Hb_001847_020 Hb_001847_020 Hb_008173_020--Hb_001847_020 Hb_017904_010 Hb_017904_010 Hb_008173_020--Hb_017904_010 Hb_111985_050 Hb_111985_050 Hb_008173_020--Hb_111985_050 Hb_000362_200 Hb_000362_200 Hb_008173_020--Hb_000362_200 Hb_002685_040 Hb_002685_040 Hb_000029_310--Hb_002685_040 Hb_004032_020 Hb_004032_020 Hb_000029_310--Hb_004032_020 Hb_112798_030 Hb_112798_030 Hb_000029_310--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_000029_310--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_000029_310--Hb_003607_150 Hb_000302_180 Hb_000302_180 Hb_000270_260--Hb_000302_180 Hb_082609_010 Hb_082609_010 Hb_000270_260--Hb_082609_010 Hb_012022_150 Hb_012022_150 Hb_000270_260--Hb_012022_150 Hb_000329_320 Hb_000329_320 Hb_000270_260--Hb_000329_320 Hb_000270_260--Hb_111985_050 Hb_001322_140 Hb_001322_140 Hb_000270_260--Hb_001322_140 Hb_000926_020 Hb_000926_020 Hb_001847_020--Hb_000926_020 Hb_188279_010 Hb_188279_010 Hb_001847_020--Hb_188279_010 Hb_000721_010 Hb_000721_010 Hb_001847_020--Hb_000721_010 Hb_011571_010 Hb_011571_010 Hb_001847_020--Hb_011571_010 Hb_000000_080 Hb_000000_080 Hb_001847_020--Hb_000000_080 Hb_003683_160 Hb_003683_160 Hb_001847_020--Hb_003683_160 Hb_002205_070 Hb_002205_070 Hb_017904_010--Hb_002205_070 Hb_000107_620 Hb_000107_620 Hb_017904_010--Hb_000107_620 Hb_017904_010--Hb_111985_050 Hb_017904_010--Hb_011571_010 Hb_009838_080 Hb_009838_080 Hb_017904_010--Hb_009838_080 Hb_002044_080 Hb_002044_080 Hb_017904_010--Hb_002044_080 Hb_007389_010 Hb_007389_010 Hb_111985_050--Hb_007389_010 Hb_003020_020 Hb_003020_020 Hb_111985_050--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_111985_050--Hb_009694_010 Hb_001959_070 Hb_001959_070 Hb_111985_050--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_111985_050--Hb_004837_030 Hb_001512_060 Hb_001512_060 Hb_000362_200--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_000362_200--Hb_001534_120 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_000362_200--Hb_005186_050 Hb_004093_090 Hb_004093_090 Hb_000362_200--Hb_004093_090 Hb_007477_070 Hb_007477_070 Hb_000362_200--Hb_007477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63616 0.487945 3.00499 0.414377 2.17872 1.77222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55325 3.78549 2.95121 1.29017 1.939

CAGE analysis