Hb_008173_110

Information

Type -
Description -
Location Contig8173: 51546-57246
Sequence    

Annotation

kegg
ID rcu:RCOM_1686510
description DNA binding protein, putative
nr
ID XP_002509794.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GXB3
description AT-hook motif nuclear-localized protein 5 OS=Arabidopsis thaliana GN=AHL5 PE=1 SV=1
trembl
ID B9RCB0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1686510 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59467: 51586-57177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_110 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001653_020 0.0766655209 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
3 Hb_003994_260 0.080959969 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
4 Hb_004453_050 0.0836966879 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
5 Hb_000069_420 0.0881401097 - - Beclin-1, putative [Ricinus communis]
6 Hb_000210_120 0.0905898382 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
7 Hb_029584_050 0.0905926636 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
8 Hb_000665_050 0.0906800731 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
9 Hb_001545_170 0.093394758 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
10 Hb_001215_040 0.0943027976 - - conserved hypothetical protein [Ricinus communis]
11 Hb_089032_030 0.0946357447 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
12 Hb_034406_030 0.0958779875 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Musa acuminata subsp. malaccensis]
13 Hb_001633_210 0.0975353982 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
14 Hb_003787_010 0.0995752866 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
15 Hb_000460_030 0.0995973449 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
16 Hb_003502_060 0.1012823779 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
17 Hb_000331_470 0.1025259626 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
18 Hb_165928_030 0.1031427695 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000120_470 0.1031709176 - - hypothetical protein VITISV_017372 [Vitis vinifera]
20 Hb_000175_540 0.1031995477 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]

Gene co-expression network

sample Hb_008173_110 Hb_008173_110 Hb_001653_020 Hb_001653_020 Hb_008173_110--Hb_001653_020 Hb_003994_260 Hb_003994_260 Hb_008173_110--Hb_003994_260 Hb_004453_050 Hb_004453_050 Hb_008173_110--Hb_004453_050 Hb_000069_420 Hb_000069_420 Hb_008173_110--Hb_000069_420 Hb_000210_120 Hb_000210_120 Hb_008173_110--Hb_000210_120 Hb_029584_050 Hb_029584_050 Hb_008173_110--Hb_029584_050 Hb_002061_040 Hb_002061_040 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_003994_260--Hb_000069_420 Hb_000483_260 Hb_000483_260 Hb_003994_260--Hb_000483_260 Hb_000258_260 Hb_000258_260 Hb_003994_260--Hb_000258_260 Hb_010812_120 Hb_010812_120 Hb_003994_260--Hb_010812_120 Hb_004324_090 Hb_004324_090 Hb_003994_260--Hb_004324_090 Hb_000603_080 Hb_000603_080 Hb_003994_260--Hb_000603_080 Hb_001633_210 Hb_001633_210 Hb_004453_050--Hb_001633_210 Hb_007416_320 Hb_007416_320 Hb_004453_050--Hb_007416_320 Hb_000120_470 Hb_000120_470 Hb_004453_050--Hb_000120_470 Hb_000614_250 Hb_000614_250 Hb_004453_050--Hb_000614_250 Hb_001545_170 Hb_001545_170 Hb_004453_050--Hb_001545_170 Hb_004994_140 Hb_004994_140 Hb_000069_420--Hb_004994_140 Hb_000069_420--Hb_004324_090 Hb_005846_040 Hb_005846_040 Hb_000069_420--Hb_005846_040 Hb_000250_060 Hb_000250_060 Hb_000069_420--Hb_000250_060 Hb_000069_420--Hb_001633_210 Hb_005914_170 Hb_005914_170 Hb_000210_120--Hb_005914_170 Hb_000103_270 Hb_000103_270 Hb_000210_120--Hb_000103_270 Hb_003098_020 Hb_003098_020 Hb_000210_120--Hb_003098_020 Hb_007928_030 Hb_007928_030 Hb_000210_120--Hb_007928_030 Hb_011344_120 Hb_011344_120 Hb_000210_120--Hb_011344_120 Hb_000136_350 Hb_000136_350 Hb_000210_120--Hb_000136_350 Hb_000015_040 Hb_000015_040 Hb_029584_050--Hb_000015_040 Hb_001439_100 Hb_001439_100 Hb_029584_050--Hb_001439_100 Hb_006615_020 Hb_006615_020 Hb_029584_050--Hb_006615_020 Hb_029584_050--Hb_001653_020 Hb_001268_410 Hb_001268_410 Hb_029584_050--Hb_001268_410 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.21777 7.8265 5.47667 6.61537 3.19044 6.87113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5501 13.04 9.1164 11.5167 4.0862

CAGE analysis