Hb_008173_130

Information

Type -
Description -
Location Contig8173: 70834-75273
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09380g
description POPTRDRAFT_1066903; bromo-adjacent homology (BAH) domain-containing family protein
nr
ID XP_012086911.1
description PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20598 PE=4 SV=1
Gene Ontology
ID GO:0005634
description bromo-adjacent homology domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_130 0.0 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
2 Hb_011918_030 0.1052107245 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
3 Hb_000260_240 0.1209443918 - - hypothetical protein JCGZ_00622 [Jatropha curcas]
4 Hb_107078_010 0.1272719229 - - -
5 Hb_000308_010 0.132152635 - - PREDICTED: uncharacterized protein LOC105639684 [Jatropha curcas]
6 Hb_028487_040 0.1605058757 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
7 Hb_003688_220 0.1641022962 - - unknown [Populus trichocarpa]
8 Hb_000134_260 0.1678059101 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_002997_110 0.1686443358 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
10 Hb_001638_120 0.1740736505 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
11 Hb_004411_050 0.1741403883 - - quinone oxidoreductase-like protein [Arabidopsis thaliana]
12 Hb_004712_090 0.1753063795 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
13 Hb_000020_080 0.1788298031 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
14 Hb_011381_070 0.1801402502 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
15 Hb_008775_030 0.1804222249 - - PREDICTED: ferric reduction oxidase 7, chloroplastic-like [Jatropha curcas]
16 Hb_001021_100 0.1811731296 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
17 Hb_000046_520 0.1821811987 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
18 Hb_000152_410 0.1822114435 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
19 Hb_005235_040 0.1840473115 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
20 Hb_004837_200 0.1844635234 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]

Gene co-expression network

sample Hb_008173_130 Hb_008173_130 Hb_011918_030 Hb_011918_030 Hb_008173_130--Hb_011918_030 Hb_000260_240 Hb_000260_240 Hb_008173_130--Hb_000260_240 Hb_107078_010 Hb_107078_010 Hb_008173_130--Hb_107078_010 Hb_000308_010 Hb_000308_010 Hb_008173_130--Hb_000308_010 Hb_028487_040 Hb_028487_040 Hb_008173_130--Hb_028487_040 Hb_003688_220 Hb_003688_220 Hb_008173_130--Hb_003688_220 Hb_001638_120 Hb_001638_120 Hb_011918_030--Hb_001638_120 Hb_011918_030--Hb_003688_220 Hb_011918_030--Hb_107078_010 Hb_000134_260 Hb_000134_260 Hb_011918_030--Hb_000134_260 Hb_001366_390 Hb_001366_390 Hb_011918_030--Hb_001366_390 Hb_000260_240--Hb_107078_010 Hb_001898_100 Hb_001898_100 Hb_000260_240--Hb_001898_100 Hb_001579_190 Hb_001579_190 Hb_000260_240--Hb_001579_190 Hb_034585_070 Hb_034585_070 Hb_000260_240--Hb_034585_070 Hb_001019_070 Hb_001019_070 Hb_000260_240--Hb_001019_070 Hb_107078_010--Hb_001638_120 Hb_000020_080 Hb_000020_080 Hb_107078_010--Hb_000020_080 Hb_000076_090 Hb_000076_090 Hb_107078_010--Hb_000076_090 Hb_004712_090 Hb_004712_090 Hb_000308_010--Hb_004712_090 Hb_000308_010--Hb_011918_030 Hb_000308_010--Hb_000134_260 Hb_015531_010 Hb_015531_010 Hb_000308_010--Hb_015531_010 Hb_002965_070 Hb_002965_070 Hb_000308_010--Hb_002965_070 Hb_002596_090 Hb_002596_090 Hb_028487_040--Hb_002596_090 Hb_028487_040--Hb_003688_220 Hb_000152_410 Hb_000152_410 Hb_028487_040--Hb_000152_410 Hb_005486_020 Hb_005486_020 Hb_028487_040--Hb_005486_020 Hb_001769_120 Hb_001769_120 Hb_028487_040--Hb_001769_120 Hb_003759_040 Hb_003759_040 Hb_028487_040--Hb_003759_040 Hb_000320_040 Hb_000320_040 Hb_003688_220--Hb_000320_040 Hb_001776_130 Hb_001776_130 Hb_003688_220--Hb_001776_130 Hb_151103_010 Hb_151103_010 Hb_003688_220--Hb_151103_010 Hb_003688_220--Hb_000134_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0329913 2.10203 5.03117 1.02002 0.147737 0.257845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0250098 0 0.148869 0.399633 1.28548

CAGE analysis