Hb_008176_010

Information

Type -
Description -
Location Contig8176: 4978-6987
Sequence    

Annotation

kegg
ID rcu:RCOM_1196090
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012065087.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
swissprot
ID O49436
description Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
trembl
ID B9SQ74
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1196090 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at4g20090-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59490: 6049-8527
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008176_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
2 Hb_000406_130 0.0772968708 - - vesicle-associated membrane protein, putative [Ricinus communis]
3 Hb_006275_070 0.0870106475 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
4 Hb_000471_110 0.0960061207 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
5 Hb_000069_210 0.0967826844 - - PREDICTED: exportin-2 [Jatropha curcas]
6 Hb_001936_130 0.1016525559 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
7 Hb_001352_020 0.1032618015 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
8 Hb_006162_010 0.1042713079 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
9 Hb_002748_020 0.1052707678 - - transducin family protein [Populus trichocarpa]
10 Hb_000116_260 0.1053522887 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
11 Hb_002099_080 0.1073270775 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
12 Hb_000479_140 0.108331458 - - TPA: hypothetical protein ZEAMMB73_881803, partial [Zea mays]
13 Hb_091296_010 0.1087109309 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
14 Hb_001629_030 0.1096992829 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
15 Hb_029879_070 0.1104748301 - - PREDICTED: phospholipase A I [Jatropha curcas]
16 Hb_001789_150 0.1117912701 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
17 Hb_024128_020 0.1118813321 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
18 Hb_000260_010 0.1120696321 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
19 Hb_003086_080 0.1121665864 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
20 Hb_004052_170 0.112395289 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_008176_010 Hb_008176_010 Hb_000406_130 Hb_000406_130 Hb_008176_010--Hb_000406_130 Hb_006275_070 Hb_006275_070 Hb_008176_010--Hb_006275_070 Hb_000471_110 Hb_000471_110 Hb_008176_010--Hb_000471_110 Hb_000069_210 Hb_000069_210 Hb_008176_010--Hb_000069_210 Hb_001936_130 Hb_001936_130 Hb_008176_010--Hb_001936_130 Hb_001352_020 Hb_001352_020 Hb_008176_010--Hb_001352_020 Hb_000406_130--Hb_000471_110 Hb_000406_130--Hb_001352_020 Hb_000479_140 Hb_000479_140 Hb_000406_130--Hb_000479_140 Hb_000116_260 Hb_000116_260 Hb_000406_130--Hb_000116_260 Hb_003376_250 Hb_003376_250 Hb_000406_130--Hb_003376_250 Hb_029879_070 Hb_029879_070 Hb_006275_070--Hb_029879_070 Hb_000479_250 Hb_000479_250 Hb_006275_070--Hb_000479_250 Hb_000656_010 Hb_000656_010 Hb_006275_070--Hb_000656_010 Hb_006275_070--Hb_001936_130 Hb_004159_020 Hb_004159_020 Hb_006275_070--Hb_004159_020 Hb_000471_110--Hb_000479_140 Hb_000471_110--Hb_000116_260 Hb_000471_110--Hb_001352_020 Hb_000497_300 Hb_000497_300 Hb_000471_110--Hb_000497_300 Hb_164010_030 Hb_164010_030 Hb_000471_110--Hb_164010_030 Hb_001876_010 Hb_001876_010 Hb_000069_210--Hb_001876_010 Hb_007416_090 Hb_007416_090 Hb_000069_210--Hb_007416_090 Hb_000095_080 Hb_000095_080 Hb_000069_210--Hb_000095_080 Hb_001789_150 Hb_001789_150 Hb_000069_210--Hb_001789_150 Hb_000069_210--Hb_001936_130 Hb_000094_210 Hb_000094_210 Hb_000069_210--Hb_000094_210 Hb_001004_070 Hb_001004_070 Hb_001936_130--Hb_001004_070 Hb_027380_220 Hb_027380_220 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_001936_130--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_001352_020--Hb_000116_260 Hb_001352_020--Hb_000497_300 Hb_001352_020--Hb_001789_150 Hb_010344_050 Hb_010344_050 Hb_001352_020--Hb_010344_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93689 1.38683 1.43959 4.80023 2.24523 3.034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31172 3.10808 5.96167 4.18714 5.93491

CAGE analysis