Hb_008179_030

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig8179: 47882-50747
Sequence    

Annotation

kegg
ID rcu:RCOM_0022220
description GATA transcription factor, putative
nr
ID XP_012093266.1
description PREDICTED: GATA transcription factor 8 [Jatropha curcas]
swissprot
ID Q9SV30
description GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2 SV=1
trembl
ID A0A067LIE5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20055 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59496: 47959-50946 , PASA_asmbl_59497: 47959-50811
cDNA
(Sanger)
(ID:Location)		 024_J18.ab1: 49598-50943 , 037_H22.ab1: 48881-50946

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008179_030 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
2 Hb_000390_210 0.1116184336 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_000322_030 0.1162441831 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
4 Hb_000140_060 0.1178208266 - - 50S ribosomal protein L5, putative [Ricinus communis]
5 Hb_000099_170 0.1184114114 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
6 Hb_003664_030 0.1197797969 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
7 Hb_000069_360 0.1211127179 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000984_150 0.1363255141 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000264_280 0.1388605731 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
10 Hb_005144_120 0.1398111749 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
11 Hb_000388_080 0.1412332924 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
12 Hb_002759_220 0.1414338518 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
13 Hb_001544_050 0.1414870143 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
14 Hb_005488_130 0.1428246618 - - transporter, putative [Ricinus communis]
15 Hb_000327_200 0.1432422141 - - glutathione-s-transferase omega, putative [Ricinus communis]
16 Hb_003948_020 0.1433365147 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
17 Hb_001433_150 0.1484418269 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000834_060 0.1485612442 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_002890_300 0.1495255374 - - abhydrolase domain containing, putative [Ricinus communis]
20 Hb_000749_020 0.1509316234 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_008179_030 Hb_008179_030 Hb_000390_210 Hb_000390_210 Hb_008179_030--Hb_000390_210 Hb_000322_030 Hb_000322_030 Hb_008179_030--Hb_000322_030 Hb_000140_060 Hb_000140_060 Hb_008179_030--Hb_000140_060 Hb_000099_170 Hb_000099_170 Hb_008179_030--Hb_000099_170 Hb_003664_030 Hb_003664_030 Hb_008179_030--Hb_003664_030 Hb_000069_360 Hb_000069_360 Hb_008179_030--Hb_000069_360 Hb_001544_050 Hb_001544_050 Hb_000390_210--Hb_001544_050 Hb_000749_260 Hb_000749_260 Hb_000390_210--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000390_210--Hb_000322_030 Hb_000181_330 Hb_000181_330 Hb_000322_030--Hb_000181_330 Hb_000322_030--Hb_000099_170 Hb_000388_080 Hb_000388_080 Hb_000322_030--Hb_000388_080 Hb_000958_120 Hb_000958_120 Hb_000322_030--Hb_000958_120 Hb_000227_400 Hb_000227_400 Hb_000322_030--Hb_000227_400 Hb_000140_060--Hb_000069_360 Hb_003994_080 Hb_003994_080 Hb_000140_060--Hb_003994_080 Hb_000422_080 Hb_000422_080 Hb_000140_060--Hb_000422_080 Hb_001195_660 Hb_001195_660 Hb_000140_060--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_000140_060--Hb_000749_020 Hb_000140_060--Hb_000099_170 Hb_071079_020 Hb_071079_020 Hb_000099_170--Hb_071079_020 Hb_000108_150 Hb_000108_150 Hb_000099_170--Hb_000108_150 Hb_002675_080 Hb_002675_080 Hb_000099_170--Hb_002675_080 Hb_005181_120 Hb_005181_120 Hb_000099_170--Hb_005181_120 Hb_000099_170--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003664_030--Hb_000264_280 Hb_003948_020 Hb_003948_020 Hb_003664_030--Hb_003948_020 Hb_005784_030 Hb_005784_030 Hb_003664_030--Hb_005784_030 Hb_148146_010 Hb_148146_010 Hb_003664_030--Hb_148146_010 Hb_003752_090 Hb_003752_090 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_000566_010 Hb_000566_010 Hb_000069_360--Hb_000566_010 Hb_000327_200 Hb_000327_200 Hb_000069_360--Hb_000327_200 Hb_000069_360--Hb_003994_080 Hb_000069_360--Hb_003752_090 Hb_003020_250 Hb_003020_250 Hb_000069_360--Hb_003020_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06389 17.0344 52.7801 46.7998 2.73204 1.77575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.67292 10.3539 6.81766 2.38898 57.3294

CAGE analysis