Hb_008195_020

Information

Type -
Description -
Location Contig8195: 19266-24662
Sequence    

Annotation

kegg
ID rcu:RCOM_1679670
description Vacuolar-processing enzyme precursor (EC:3.4.22.34)
nr
ID XP_002509577.1
description Vacuolar-processing enzyme precursor [Ricinus communis]
swissprot
ID P49042
description Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1
trembl
ID B9RBP3
description Vacuolar-processing enzyme OS=Ricinus communis GN=RCOM_1679670 PE=4 SV=1
Gene Ontology
ID GO:0005773
description vacuolar-processing enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59534: 19257-24301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008195_020 0.0 - - Vacuolar-processing enzyme precursor [Ricinus communis]
2 Hb_000044_050 0.0963169181 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
3 Hb_026053_030 0.1321103564 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
4 Hb_001907_020 0.1393985539 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
5 Hb_011344_140 0.1487933167 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
6 Hb_000417_150 0.1489962216 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
7 Hb_000236_430 0.150912296 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
8 Hb_000465_380 0.153711463 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_002045_220 0.1537892519 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
10 Hb_001227_040 0.153904251 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
11 Hb_004007_230 0.1590002254 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
12 Hb_009247_030 0.1626464572 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_022108_010 0.1645734975 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
14 Hb_056506_010 0.1661119097 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_004767_060 0.1683627411 - - PREDICTED: uncharacterized protein LOC105761928 [Gossypium raimondii]
16 Hb_010261_030 0.1710074787 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_003176_020 0.1720066763 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
18 Hb_000029_180 0.1733085099 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
19 Hb_000866_390 0.1740964886 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
20 Hb_001008_020 0.1752835027 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_008195_020 Hb_008195_020 Hb_000044_050 Hb_000044_050 Hb_008195_020--Hb_000044_050 Hb_026053_030 Hb_026053_030 Hb_008195_020--Hb_026053_030 Hb_001907_020 Hb_001907_020 Hb_008195_020--Hb_001907_020 Hb_011344_140 Hb_011344_140 Hb_008195_020--Hb_011344_140 Hb_000417_150 Hb_000417_150 Hb_008195_020--Hb_000417_150 Hb_000236_430 Hb_000236_430 Hb_008195_020--Hb_000236_430 Hb_000044_050--Hb_026053_030 Hb_001989_080 Hb_001989_080 Hb_000044_050--Hb_001989_080 Hb_004007_230 Hb_004007_230 Hb_000044_050--Hb_004007_230 Hb_000044_050--Hb_000417_150 Hb_004143_140 Hb_004143_140 Hb_000044_050--Hb_004143_140 Hb_026053_030--Hb_000417_150 Hb_026053_030--Hb_004007_230 Hb_031949_010 Hb_031949_010 Hb_026053_030--Hb_031949_010 Hb_026053_030--Hb_011344_140 Hb_026053_030--Hb_001907_020 Hb_001907_020--Hb_011344_140 Hb_022108_010 Hb_022108_010 Hb_001907_020--Hb_022108_010 Hb_000649_280 Hb_000649_280 Hb_001907_020--Hb_000649_280 Hb_004055_100 Hb_004055_100 Hb_001907_020--Hb_004055_100 Hb_002045_220 Hb_002045_220 Hb_001907_020--Hb_002045_220 Hb_011344_140--Hb_002045_220 Hb_010921_060 Hb_010921_060 Hb_011344_140--Hb_010921_060 Hb_000465_380 Hb_000465_380 Hb_011344_140--Hb_000465_380 Hb_000412_090 Hb_000412_090 Hb_011344_140--Hb_000412_090 Hb_011344_140--Hb_000649_280 Hb_028872_100 Hb_028872_100 Hb_000417_150--Hb_028872_100 Hb_000417_150--Hb_004007_230 Hb_000417_150--Hb_031949_010 Hb_001411_100 Hb_001411_100 Hb_000417_150--Hb_001411_100 Hb_000236_430--Hb_026053_030 Hb_000236_430--Hb_000417_150 Hb_172426_010 Hb_172426_010 Hb_000236_430--Hb_172426_010 Hb_003727_060 Hb_003727_060 Hb_000236_430--Hb_003727_060 Hb_004063_010 Hb_004063_010 Hb_000236_430--Hb_004063_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107312 58.7261 2.62193 9.06633 0.601683 0.782814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0639455 0.0335434 0 16.74 31.8408

CAGE analysis