Hb_008195_070

Information

Type -
Description -
Location Contig8195: 82799-83723
Sequence    

Annotation

kegg
ID sita:101757082
description thylakoid lumenal protein At1g12250, chloroplastic-like
nr
ID XP_012087131.1
description PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q8H1Q1
description Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1
trembl
ID A0A0A9MEA4
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0009535
description thylakoid lumenal protein chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59536: 82839-99860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008195_070 0.0 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_002375_030 0.0590194714 - - F-box family protein [Populus trichocarpa]
3 Hb_146225_020 0.0591198411 - - chlorophyll A/B binding protein, putative [Ricinus communis]
4 Hb_000719_030 0.0672676969 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
5 Hb_013726_060 0.0677813675 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
6 Hb_002121_050 0.0699699616 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
7 Hb_000230_420 0.0710830331 - - GS [Hevea brasiliensis subsp. brasiliensis]
8 Hb_008225_050 0.072516066 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
9 Hb_007537_040 0.0732978813 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
10 Hb_001006_040 0.0733502683 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
11 Hb_001292_030 0.0737022778 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
12 Hb_001975_100 0.0750492997 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
13 Hb_003623_080 0.0754562504 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
14 Hb_000254_130 0.077218698 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
15 Hb_002752_020 0.0776180205 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
16 Hb_003632_020 0.077947212 - - calcium-binding family protein [Populus trichocarpa]
17 Hb_000369_110 0.0779686091 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_001135_310 0.0783026959 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
19 Hb_002272_210 0.0788580366 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
20 Hb_000531_100 0.0795299648 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_008195_070 Hb_008195_070 Hb_002375_030 Hb_002375_030 Hb_008195_070--Hb_002375_030 Hb_146225_020 Hb_146225_020 Hb_008195_070--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_008195_070--Hb_000719_030 Hb_013726_060 Hb_013726_060 Hb_008195_070--Hb_013726_060 Hb_002121_050 Hb_002121_050 Hb_008195_070--Hb_002121_050 Hb_000230_420 Hb_000230_420 Hb_008195_070--Hb_000230_420 Hb_001006_040 Hb_001006_040 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_002375_030--Hb_001975_100 Hb_000254_130 Hb_000254_130 Hb_002375_030--Hb_000254_130 Hb_000049_100 Hb_000049_100 Hb_002375_030--Hb_000049_100 Hb_146225_020--Hb_000719_030 Hb_001135_310 Hb_001135_310 Hb_146225_020--Hb_001135_310 Hb_146225_020--Hb_013726_060 Hb_001675_090 Hb_001675_090 Hb_146225_020--Hb_001675_090 Hb_000531_100 Hb_000531_100 Hb_146225_020--Hb_000531_100 Hb_001571_100 Hb_001571_100 Hb_146225_020--Hb_001571_100 Hb_000719_030--Hb_001135_310 Hb_000719_030--Hb_001675_090 Hb_002818_110 Hb_002818_110 Hb_000719_030--Hb_002818_110 Hb_000719_030--Hb_013726_060 Hb_000719_030--Hb_001571_100 Hb_013726_060--Hb_000531_100 Hb_001717_060 Hb_001717_060 Hb_013726_060--Hb_001717_060 Hb_001766_160 Hb_001766_160 Hb_013726_060--Hb_001766_160 Hb_002529_120 Hb_002529_120 Hb_013726_060--Hb_002529_120 Hb_000497_050 Hb_000497_050 Hb_002121_050--Hb_000497_050 Hb_006132_080 Hb_006132_080 Hb_002121_050--Hb_006132_080 Hb_002752_020 Hb_002752_020 Hb_002121_050--Hb_002752_020 Hb_156093_010 Hb_156093_010 Hb_002121_050--Hb_156093_010 Hb_008225_050 Hb_008225_050 Hb_002121_050--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_002121_050--Hb_007537_040 Hb_000230_420--Hb_001292_030 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_000083_180 Hb_000083_180 Hb_000230_420--Hb_000083_180 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120315 1.78406 43.8311 18.1596 0.0795483 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260026 0 0 0.930155 59.8846

CAGE analysis