Hb_008202_020

Information

Type -
Description -
Location Contig8202: 5310-9771
Sequence    

Annotation

kegg
ID rcu:RCOM_1579690
description receptor serine/threonine kinase, putative (EC:2.7.10.2)
nr
ID XP_002513562.1
description receptor serine/threonine kinase, putative [Ricinus communis]
swissprot
ID Q3ECH2
description Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2
trembl
ID B9RIJ3
description Receptor serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_1579690 PE=3 SV=1
Gene Ontology
ID GO:0004674
description glycerophosphodiester phosphodiesterase protein kinase domain-containing gdpdl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59584: 5476-7380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008202_020 0.0 - - receptor serine/threonine kinase, putative [Ricinus communis]
2 Hb_004899_360 0.0616967457 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
3 Hb_001619_140 0.0730950041 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_002010_020 0.0758525191 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
5 Hb_004109_240 0.0922351216 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
6 Hb_154466_010 0.0980216922 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
7 Hb_121540_010 0.107550358 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
8 Hb_120011_010 0.1115061732 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_077694_010 0.1136041594 - - uncharacterized protein LOC100305624 [Glycine max]
10 Hb_008810_030 0.1196781558 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
11 Hb_029664_010 0.1210251002 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_097007_020 0.1213937558 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
13 Hb_021254_020 0.1218080612 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_164146_020 0.1222434136 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_006615_060 0.1227690601 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002471_190 0.1265045157 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
17 Hb_001310_010 0.1266368869 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
18 Hb_000172_410 0.1292541704 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_000087_200 0.1311215368 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
20 Hb_074672_010 0.1318733839 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008202_020 Hb_008202_020 Hb_004899_360 Hb_004899_360 Hb_008202_020--Hb_004899_360 Hb_001619_140 Hb_001619_140 Hb_008202_020--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_008202_020--Hb_002010_020 Hb_004109_240 Hb_004109_240 Hb_008202_020--Hb_004109_240 Hb_154466_010 Hb_154466_010 Hb_008202_020--Hb_154466_010 Hb_121540_010 Hb_121540_010 Hb_008202_020--Hb_121540_010 Hb_004899_360--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_004899_360--Hb_008810_030 Hb_097007_020 Hb_097007_020 Hb_004899_360--Hb_097007_020 Hb_004899_360--Hb_001619_140 Hb_004899_360--Hb_002010_020 Hb_001619_140--Hb_154466_010 Hb_120011_010 Hb_120011_010 Hb_001619_140--Hb_120011_010 Hb_000571_030 Hb_000571_030 Hb_001619_140--Hb_000571_030 Hb_007858_020 Hb_007858_020 Hb_001619_140--Hb_007858_020 Hb_002010_020--Hb_154466_010 Hb_002471_190 Hb_002471_190 Hb_002010_020--Hb_002471_190 Hb_002391_020 Hb_002391_020 Hb_002010_020--Hb_002391_020 Hb_002010_020--Hb_001619_140 Hb_021254_020 Hb_021254_020 Hb_004109_240--Hb_021254_020 Hb_000087_200 Hb_000087_200 Hb_004109_240--Hb_000087_200 Hb_028486_010 Hb_028486_010 Hb_004109_240--Hb_028486_010 Hb_004109_240--Hb_121540_010 Hb_154466_010--Hb_002471_190 Hb_154466_010--Hb_002391_020 Hb_158111_010 Hb_158111_010 Hb_154466_010--Hb_158111_010 Hb_003060_150 Hb_003060_150 Hb_121540_010--Hb_003060_150 Hb_005381_010 Hb_005381_010 Hb_121540_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_121540_010--Hb_000069_530 Hb_121540_010--Hb_028486_010 Hb_077694_010 Hb_077694_010 Hb_121540_010--Hb_077694_010 Hb_001660_080 Hb_001660_080 Hb_121540_010--Hb_001660_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0116306 52.696 36.9683 10.723 0 0.0425673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.94785 7.2059

CAGE analysis