Hb_008215_030

Information

Type -
Description -
Location Contig8215: 70585-70809
Sequence    

Annotation

kegg
ID rcu:RCOM_0254780
description hypothetical protein
nr
ID ADR30785.1
description hypothetical protein 3 [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I1SN82
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59613: 70305-70936
cDNA
(Sanger)
(ID:Location)		 004_D01.ab1: 70318-70936

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008215_030 0.0 - - hypothetical protein 3 [Hevea brasiliensis]
2 Hb_009778_040 0.1797786008 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
3 Hb_015430_010 0.1811781366 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
4 Hb_001105_090 0.1841168353 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
5 Hb_116420_020 0.1850148818 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
6 Hb_000031_080 0.1870979028 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
7 Hb_000809_060 0.1979569254 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
8 Hb_000483_090 0.2019909999 - - -
9 Hb_000167_030 0.2033797939 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
10 Hb_185224_010 0.207525088 - - zinc finger protein, putative [Ricinus communis]
11 Hb_003502_100 0.2104751274 - - -
12 Hb_008066_030 0.2120234182 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
13 Hb_004429_110 0.2152545494 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
14 Hb_003007_010 0.2167851194 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
15 Hb_003581_300 0.2216289831 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
16 Hb_002243_060 0.2239524077 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
17 Hb_004755_030 0.2266008395 - - EG964 [Manihot glaziovii]
18 Hb_011909_110 0.2284683844 - - PREDICTED: uncharacterized protein LOC105633210 [Jatropha curcas]
19 Hb_020805_060 0.2293093595 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
20 Hb_007313_080 0.2294102323 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]

Gene co-expression network

sample Hb_008215_030 Hb_008215_030 Hb_009778_040 Hb_009778_040 Hb_008215_030--Hb_009778_040 Hb_015430_010 Hb_015430_010 Hb_008215_030--Hb_015430_010 Hb_001105_090 Hb_001105_090 Hb_008215_030--Hb_001105_090 Hb_116420_020 Hb_116420_020 Hb_008215_030--Hb_116420_020 Hb_000031_080 Hb_000031_080 Hb_008215_030--Hb_000031_080 Hb_000809_060 Hb_000809_060 Hb_008215_030--Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010 Hb_003581_300 Hb_003581_300 Hb_015430_010--Hb_003581_300 Hb_015430_010--Hb_001105_090 Hb_006018_060 Hb_006018_060 Hb_015430_010--Hb_006018_060 Hb_000178_120 Hb_000178_120 Hb_015430_010--Hb_000178_120 Hb_002042_080 Hb_002042_080 Hb_015430_010--Hb_002042_080 Hb_015430_010--Hb_009778_040 Hb_004429_110 Hb_004429_110 Hb_001105_090--Hb_004429_110 Hb_007313_080 Hb_007313_080 Hb_001105_090--Hb_007313_080 Hb_001105_090--Hb_120823_010 Hb_001105_090--Hb_000809_060 Hb_001105_090--Hb_002081_030 Hb_116420_020--Hb_009778_040 Hb_000167_030 Hb_000167_030 Hb_116420_020--Hb_000167_030 Hb_025645_030 Hb_025645_030 Hb_116420_020--Hb_025645_030 Hb_001096_030 Hb_001096_030 Hb_116420_020--Hb_001096_030 Hb_007254_080 Hb_007254_080 Hb_116420_020--Hb_007254_080 Hb_005663_120 Hb_005663_120 Hb_116420_020--Hb_005663_120 Hb_098533_020 Hb_098533_020 Hb_000031_080--Hb_098533_020 Hb_000031_080--Hb_009778_040 Hb_002243_060 Hb_002243_060 Hb_000031_080--Hb_002243_060 Hb_000031_080--Hb_000809_060 Hb_000031_080--Hb_002081_030 Hb_000465_510 Hb_000465_510 Hb_000031_080--Hb_000465_510 Hb_000809_060--Hb_002081_030 Hb_000809_060--Hb_009778_040 Hb_007885_010 Hb_007885_010 Hb_000809_060--Hb_007885_010 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5884 29.9076 179.087 336.059 2.69973 5.32719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
707.837 893.936 228.72 106.879 3.57717

CAGE analysis