Hb_008221_140

Information

Type -
Description -
Location Contig8221: 61483-64142
Sequence    

Annotation

kegg
ID rcu:RCOM_0105950
description protein with unknown function
nr
ID XP_012084897.1
description PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JT11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59616: 61520-64139
cDNA
(Sanger)
(ID:Location)		 014_H12.ab1: 61525-62512 , 042_L08.ab1: 61524-62641

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008221_140 0.0 - - PREDICTED: uncharacterized protein LOC105644226 [Jatropha curcas]
2 Hb_005463_040 0.0550235864 - - signal transducer, putative [Ricinus communis]
3 Hb_000676_180 0.0735538446 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
4 Hb_002183_090 0.0748916194 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
5 Hb_001226_040 0.0756339417 - - protein with unknown function [Ricinus communis]
6 Hb_000167_140 0.0756382842 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
7 Hb_000085_050 0.076716895 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_002942_190 0.0776086093 - - poly(A) polymerase, putative [Ricinus communis]
9 Hb_005618_170 0.0778920459 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
10 Hb_004586_340 0.0793014598 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
11 Hb_007416_320 0.0796625984 - - conserved hypothetical protein [Ricinus communis]
12 Hb_086639_030 0.0800282709 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_058999_020 0.0812468075 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]
14 Hb_027380_050 0.0815785626 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
15 Hb_000876_070 0.0817555674 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
16 Hb_002878_020 0.0835470227 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_000384_100 0.084240857 - - hydrolase, putative [Ricinus communis]
18 Hb_002739_100 0.0844970603 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
19 Hb_001766_110 0.0849933597 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
20 Hb_001633_050 0.0854911345 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]

Gene co-expression network

sample Hb_008221_140 Hb_008221_140 Hb_005463_040 Hb_005463_040 Hb_008221_140--Hb_005463_040 Hb_000676_180 Hb_000676_180 Hb_008221_140--Hb_000676_180 Hb_002183_090 Hb_002183_090 Hb_008221_140--Hb_002183_090 Hb_001226_040 Hb_001226_040 Hb_008221_140--Hb_001226_040 Hb_000167_140 Hb_000167_140 Hb_008221_140--Hb_000167_140 Hb_000085_050 Hb_000085_050 Hb_008221_140--Hb_000085_050 Hb_086639_030 Hb_086639_030 Hb_005463_040--Hb_086639_030 Hb_005463_040--Hb_002183_090 Hb_012675_060 Hb_012675_060 Hb_005463_040--Hb_012675_060 Hb_006031_020 Hb_006031_020 Hb_005463_040--Hb_006031_020 Hb_000384_100 Hb_000384_100 Hb_005463_040--Hb_000384_100 Hb_004116_190 Hb_004116_190 Hb_000676_180--Hb_004116_190 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_005846_040 Hb_005846_040 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_002183_090--Hb_000085_050 Hb_000976_170 Hb_000976_170 Hb_002183_090--Hb_000976_170 Hb_002183_090--Hb_000384_100 Hb_033834_040 Hb_033834_040 Hb_002183_090--Hb_033834_040 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_002499_040 Hb_002499_040 Hb_001226_040--Hb_002499_040 Hb_005348_140 Hb_005348_140 Hb_001226_040--Hb_005348_140 Hb_000757_060 Hb_000757_060 Hb_001226_040--Hb_000757_060 Hb_000538_270 Hb_000538_270 Hb_001226_040--Hb_000538_270 Hb_000556_160 Hb_000556_160 Hb_001226_040--Hb_000556_160 Hb_129204_030 Hb_129204_030 Hb_000167_140--Hb_129204_030 Hb_000608_370 Hb_000608_370 Hb_000167_140--Hb_000608_370 Hb_000167_140--Hb_000676_180 Hb_008878_030 Hb_008878_030 Hb_000167_140--Hb_008878_030 Hb_001140_060 Hb_001140_060 Hb_000167_140--Hb_001140_060 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8876 15.8339 11.7137 11.1559 19.2243 19.3713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0949 43.4961 36.2298 21.0988 17.1757

CAGE analysis