Hb_008221_180

Information

Type -
Description -
Location Contig8221: 74069-83428
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10770g
description POPTRDRAFT_887004; hypothetical protein
nr
ID XP_012084890.1
description PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5J8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20308 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59619: 75018-79399 , PASA_asmbl_59621: 78745-79035 , PASA_asmbl_59623: 80252-83416 , PASA_asmbl_59624: 81343-81615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008221_180 0.0 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
2 Hb_007657_010 0.0592717603 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000343_250 0.0702833216 - - PREDICTED: protein CASC3 [Jatropha curcas]
4 Hb_009486_060 0.0706205994 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
5 Hb_000346_060 0.075135381 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
6 Hb_001671_010 0.0761545638 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
7 Hb_000317_050 0.0782022882 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
8 Hb_000029_050 0.0782289761 - - expressed protein, putative [Ricinus communis]
9 Hb_000165_250 0.0790865321 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
10 Hb_001902_030 0.0803810858 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
11 Hb_002263_020 0.0808643313 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
12 Hb_033006_030 0.0810521278 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
13 Hb_000834_200 0.0821869227 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
14 Hb_000866_260 0.0831511662 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
15 Hb_001247_250 0.0842512902 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
16 Hb_005686_090 0.084741853 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
17 Hb_000291_050 0.0854608396 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
18 Hb_005496_130 0.0859901339 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
19 Hb_004963_030 0.0862344452 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_006649_050 0.0863253666 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]

Gene co-expression network

sample Hb_008221_180 Hb_008221_180 Hb_007657_010 Hb_007657_010 Hb_008221_180--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_008221_180--Hb_000343_250 Hb_009486_060 Hb_009486_060 Hb_008221_180--Hb_009486_060 Hb_000346_060 Hb_000346_060 Hb_008221_180--Hb_000346_060 Hb_001671_010 Hb_001671_010 Hb_008221_180--Hb_001671_010 Hb_000317_050 Hb_000317_050 Hb_008221_180--Hb_000317_050 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_007657_010--Hb_000346_060 Hb_002263_020 Hb_002263_020 Hb_007657_010--Hb_002263_020 Hb_007657_010--Hb_000343_250 Hb_004097_070 Hb_004097_070 Hb_007657_010--Hb_004097_070 Hb_002732_040 Hb_002732_040 Hb_000343_250--Hb_002732_040 Hb_000462_060 Hb_000462_060 Hb_000343_250--Hb_000462_060 Hb_000200_380 Hb_000200_380 Hb_000343_250--Hb_000200_380 Hb_008406_200 Hb_008406_200 Hb_000343_250--Hb_008406_200 Hb_000343_250--Hb_000346_060 Hb_004963_030 Hb_004963_030 Hb_000343_250--Hb_004963_030 Hb_001205_230 Hb_001205_230 Hb_009486_060--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_009486_060--Hb_027346_010 Hb_000574_400 Hb_000574_400 Hb_009486_060--Hb_000574_400 Hb_002234_170 Hb_002234_170 Hb_009486_060--Hb_002234_170 Hb_009486_060--Hb_001671_010 Hb_004003_040 Hb_004003_040 Hb_000346_060--Hb_004003_040 Hb_000346_060--Hb_004097_070 Hb_000346_060--Hb_002732_040 Hb_000346_060--Hb_004963_030 Hb_004225_050 Hb_004225_050 Hb_001671_010--Hb_004225_050 Hb_015941_020 Hb_015941_020 Hb_001671_010--Hb_015941_020 Hb_005496_130 Hb_005496_130 Hb_001671_010--Hb_005496_130 Hb_002725_120 Hb_002725_120 Hb_001671_010--Hb_002725_120 Hb_005686_090 Hb_005686_090 Hb_001671_010--Hb_005686_090 Hb_002592_060 Hb_002592_060 Hb_000317_050--Hb_002592_060 Hb_001546_080 Hb_001546_080 Hb_000317_050--Hb_001546_080 Hb_001307_220 Hb_001307_220 Hb_000317_050--Hb_001307_220 Hb_000329_710 Hb_000329_710 Hb_000317_050--Hb_000329_710 Hb_000318_250 Hb_000318_250 Hb_000317_050--Hb_000318_250 Hb_000317_050--Hb_002263_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8307 11.3004 9.98127 8.05417 13.8642 12.3311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.66399 11.9451 12.5048 6.81446 17.3682

CAGE analysis