Hb_008221_200

Information

Type -
Description -
Location Contig8221: 104114-107121
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10740g
description POPTRDRAFT_660821; hypothetical protein
nr
ID XP_012068518.1
description PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
swissprot
ID F4IWA8
description Protein trichome birefringence-like 41 OS=Arabidopsis thaliana GN=TBL41 PE=2 SV=1
trembl
ID B9I1R0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10740g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008221_200 0.0 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
2 Hb_000718_060 0.0560095477 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
3 Hb_002942_200 0.0663913816 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
4 Hb_008054_030 0.0711729598 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
5 Hb_009393_090 0.0723083205 - - acyltransferase, putative [Ricinus communis]
6 Hb_001117_050 0.0760304194 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
7 Hb_003339_010 0.078129781 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
8 Hb_010164_030 0.0855126469 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
9 Hb_007163_100 0.0890939059 - - BnaC03g52280D [Brassica napus]
10 Hb_000617_330 0.0926756909 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
11 Hb_003054_070 0.0927327253 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
12 Hb_000160_250 0.0929087174 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
13 Hb_007270_020 0.0934459109 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
14 Hb_005542_120 0.0941913556 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
15 Hb_002066_110 0.0965920581 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
16 Hb_005694_160 0.0971335013 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001032_020 0.0991402174 - - ankyrin repeat protein [Bruguiera gymnorhiza]
18 Hb_039075_020 0.0998842821 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
19 Hb_147006_010 0.1003584957 - - receptor like protein 35 [Arabidopsis thaliana]
20 Hb_002150_090 0.1013453138 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]

Gene co-expression network

sample Hb_008221_200 Hb_008221_200 Hb_000718_060 Hb_000718_060 Hb_008221_200--Hb_000718_060 Hb_002942_200 Hb_002942_200 Hb_008221_200--Hb_002942_200 Hb_008054_030 Hb_008054_030 Hb_008221_200--Hb_008054_030 Hb_009393_090 Hb_009393_090 Hb_008221_200--Hb_009393_090 Hb_001117_050 Hb_001117_050 Hb_008221_200--Hb_001117_050 Hb_003339_010 Hb_003339_010 Hb_008221_200--Hb_003339_010 Hb_000718_060--Hb_009393_090 Hb_001100_070 Hb_001100_070 Hb_000718_060--Hb_001100_070 Hb_003873_020 Hb_003873_020 Hb_000718_060--Hb_003873_020 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_007270_020 Hb_007270_020 Hb_000718_060--Hb_007270_020 Hb_001098_040 Hb_001098_040 Hb_002942_200--Hb_001098_040 Hb_001206_100 Hb_001206_100 Hb_002942_200--Hb_001206_100 Hb_009421_070 Hb_009421_070 Hb_002942_200--Hb_009421_070 Hb_002942_200--Hb_007270_020 Hb_002942_200--Hb_009393_090 Hb_008054_030--Hb_003339_010 Hb_000028_190 Hb_000028_190 Hb_008054_030--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_008054_030--Hb_007163_100 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_002150_090 Hb_002150_090 Hb_008054_030--Hb_002150_090 Hb_000818_090 Hb_000818_090 Hb_009393_090--Hb_000818_090 Hb_009393_090--Hb_001100_070 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_009393_090--Hb_007270_020 Hb_005542_120 Hb_005542_120 Hb_001117_050--Hb_005542_120 Hb_001794_040 Hb_001794_040 Hb_001117_050--Hb_001794_040 Hb_001117_050--Hb_008054_030 Hb_000392_110 Hb_000392_110 Hb_001117_050--Hb_000392_110 Hb_010164_030 Hb_010164_030 Hb_001117_050--Hb_010164_030 Hb_003339_010--Hb_005762_010 Hb_003339_010--Hb_000028_190 Hb_003339_010--Hb_007163_100 Hb_003339_010--Hb_002150_090 Hb_004137_040 Hb_004137_040 Hb_003339_010--Hb_004137_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0375236 0.116871 0.182693 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0135231 0.139235

CAGE analysis