Hb_008225_090

Information

Type -
Description -
Location Contig8225: 46649-50903
Sequence    

Annotation

kegg
ID rcu:RCOM_1508280
description afc, putative (EC:2.7.12.1)
nr
ID XP_012079958.1
description PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
swissprot
ID P51567
description Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1
trembl
ID A0A067K460
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11387 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase afc2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59635: 46758-48482 , PASA_asmbl_59637: 49654-50988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008225_090 0.0 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
2 Hb_002092_120 0.0708218177 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
3 Hb_000270_470 0.0749630317 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
4 Hb_000270_310 0.0804709844 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
5 Hb_000010_110 0.0838449414 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
6 Hb_000176_020 0.0870113507 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
7 Hb_001025_090 0.0870837778 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
8 Hb_012565_070 0.0872574186 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_003647_140 0.087945434 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
10 Hb_171900_090 0.0887379539 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000373_050 0.0893929861 - - PREDICTED: protein WHI3 [Jatropha curcas]
12 Hb_001671_040 0.0899743643 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
13 Hb_000300_260 0.0910549228 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
14 Hb_001623_270 0.0929199617 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
15 Hb_000522_150 0.0936784635 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
16 Hb_002307_180 0.0941947415 - - PREDICTED: rRNA-processing protein EFG1 isoform X2 [Jatropha curcas]
17 Hb_007254_020 0.0951216652 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
18 Hb_002027_350 0.0969832296 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
19 Hb_000086_170 0.0980836891 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
20 Hb_003848_040 0.099482043 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008225_090 Hb_008225_090 Hb_002092_120 Hb_002092_120 Hb_008225_090--Hb_002092_120 Hb_000270_470 Hb_000270_470 Hb_008225_090--Hb_000270_470 Hb_000270_310 Hb_000270_310 Hb_008225_090--Hb_000270_310 Hb_000010_110 Hb_000010_110 Hb_008225_090--Hb_000010_110 Hb_000176_020 Hb_000176_020 Hb_008225_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_008225_090--Hb_001025_090 Hb_000300_260 Hb_000300_260 Hb_002092_120--Hb_000300_260 Hb_002092_120--Hb_000176_020 Hb_002893_040 Hb_002893_040 Hb_002092_120--Hb_002893_040 Hb_002572_020 Hb_002572_020 Hb_002092_120--Hb_002572_020 Hb_002092_120--Hb_000270_470 Hb_000270_470--Hb_001025_090 Hb_000789_320 Hb_000789_320 Hb_000270_470--Hb_000789_320 Hb_111036_010 Hb_111036_010 Hb_000270_470--Hb_111036_010 Hb_171900_090 Hb_171900_090 Hb_000270_470--Hb_171900_090 Hb_000270_470--Hb_000176_020 Hb_161574_020 Hb_161574_020 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_000086_170 Hb_000086_170 Hb_000270_310--Hb_000086_170 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010 Hb_002553_040 Hb_002553_040 Hb_000010_110--Hb_002553_040 Hb_001953_070 Hb_001953_070 Hb_000010_110--Hb_001953_070 Hb_003001_080 Hb_003001_080 Hb_000010_110--Hb_003001_080 Hb_000522_150 Hb_000522_150 Hb_000010_110--Hb_000522_150 Hb_005271_220 Hb_005271_220 Hb_000010_110--Hb_005271_220 Hb_002217_110 Hb_002217_110 Hb_000010_110--Hb_002217_110 Hb_000176_020--Hb_171900_090 Hb_001623_270 Hb_001623_270 Hb_000176_020--Hb_001623_270 Hb_000176_020--Hb_001025_090 Hb_000230_460 Hb_000230_460 Hb_000176_020--Hb_000230_460 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000176_020--Hb_000789_320 Hb_004807_020 Hb_004807_020 Hb_001025_090--Hb_004807_020 Hb_001025_090--Hb_171900_090 Hb_001025_090--Hb_000789_320 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0843 26.2527 37.6057 26.9134 17.9796 15.2642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1732 42.5163 10.0638 18.6141 20.1623

CAGE analysis