Hb_008226_050

Information

Type transcription factor
Description TF Family: bZIP
Location Contig8226: 34111-37556
Sequence    

Annotation

kegg
ID rcu:RCOM_0689740
description Transcription factor RF2b, putative
nr
ID XP_012091145.1
description PREDICTED: transcription factor RF2b [Jatropha curcas]
swissprot
ID Q6S4P4
description Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=2
trembl
ID A0A067JCX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03323 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor rf2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59643: 34065-37136 , PASA_asmbl_59645: 36569-36781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_050 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
2 Hb_000675_130 0.0753467 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
3 Hb_003641_040 0.0763446109 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
4 Hb_002205_220 0.0788652885 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
5 Hb_001257_070 0.0817283953 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
6 Hb_004241_160 0.0829476179 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
7 Hb_000130_400 0.0836201396 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
8 Hb_059832_010 0.0839337105 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
9 Hb_000445_320 0.086280341 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
10 Hb_000193_170 0.0865829994 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
11 Hb_000375_200 0.0919940919 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_000732_090 0.0927850701 - - cyclin d, putative [Ricinus communis]
13 Hb_000187_020 0.0937430157 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
14 Hb_011859_010 0.0949688529 - - hypothetical protein VITISV_027923 [Vitis vinifera]
15 Hb_000394_120 0.0958632466 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
16 Hb_002453_040 0.0958682974 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
17 Hb_005918_020 0.0967901687 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
18 Hb_005914_100 0.0969391735 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006332_030 0.0978217985 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
20 Hb_030545_020 0.0991412307 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008226_050 Hb_008226_050 Hb_000675_130 Hb_000675_130 Hb_008226_050--Hb_000675_130 Hb_003641_040 Hb_003641_040 Hb_008226_050--Hb_003641_040 Hb_002205_220 Hb_002205_220 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400 Hb_000394_120 Hb_000394_120 Hb_000675_130--Hb_000394_120 Hb_000675_130--Hb_003641_040 Hb_000675_130--Hb_002205_220 Hb_001123_180 Hb_001123_180 Hb_000675_130--Hb_001123_180 Hb_000193_170 Hb_000193_170 Hb_000675_130--Hb_000193_170 Hb_001969_030 Hb_001969_030 Hb_003641_040--Hb_001969_030 Hb_000853_020 Hb_000853_020 Hb_003641_040--Hb_000853_020 Hb_003641_040--Hb_000394_120 Hb_003641_040--Hb_001123_180 Hb_000375_200 Hb_000375_200 Hb_002205_220--Hb_000375_200 Hb_028995_020 Hb_028995_020 Hb_002205_220--Hb_028995_020 Hb_002110_070 Hb_002110_070 Hb_002205_220--Hb_002110_070 Hb_000175_110 Hb_000175_110 Hb_002205_220--Hb_000175_110 Hb_012395_040 Hb_012395_040 Hb_001257_070--Hb_012395_040 Hb_034420_010 Hb_034420_010 Hb_001257_070--Hb_034420_010 Hb_005288_090 Hb_005288_090 Hb_001257_070--Hb_005288_090 Hb_005618_070 Hb_005618_070 Hb_001257_070--Hb_005618_070 Hb_072620_010 Hb_072620_010 Hb_001257_070--Hb_072620_010 Hb_000160_110 Hb_000160_110 Hb_004241_160--Hb_000160_110 Hb_006573_310 Hb_006573_310 Hb_004241_160--Hb_006573_310 Hb_005914_100 Hb_005914_100 Hb_004241_160--Hb_005914_100 Hb_000527_030 Hb_000527_030 Hb_004241_160--Hb_000527_030 Hb_004241_160--Hb_003641_040 Hb_000130_400--Hb_000375_200 Hb_059832_010 Hb_059832_010 Hb_000130_400--Hb_059832_010 Hb_000496_100 Hb_000496_100 Hb_000130_400--Hb_000496_100 Hb_000130_400--Hb_000193_170 Hb_028486_020 Hb_028486_020 Hb_000130_400--Hb_028486_020 Hb_000187_020 Hb_000187_020 Hb_000130_400--Hb_000187_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0866978 12.574 4.25747 0.031637 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0703019 0.91267

CAGE analysis