Hb_008226_070

Information

Type -
Description -
Location Contig8226: 45728-49976
Sequence    

Annotation

kegg
ID cic:CICLE_v10032524mg
description hypothetical protein
nr
ID XP_012091147.1
description PREDICTED: expansin-A8 [Jatropha curcas]
swissprot
ID O22874
description Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1
trembl
ID A0A067JQ64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03325 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59648: 45749-47055 , PASA_asmbl_59649: 47231-49740
cDNA
(Sanger)
(ID:Location)		 012_I20.ab1: 45752-46732 , 014_K17.ab1: 45751-46630 , 017_A09.ab1: 45749-46562 , 023_J16.ab1: 45751-46531 , 041_I09.ab1: 45751-46694 , 046_L09.ab1: 45751-46724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_070 0.0 - - PREDICTED: expansin-A8 [Jatropha curcas]
2 Hb_000159_120 0.0809999299 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
3 Hb_012022_080 0.0877421452 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_012760_040 0.0987292319 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
5 Hb_003226_120 0.1053124848 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000190_090 0.1057160168 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
7 Hb_001221_020 0.1059596016 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
8 Hb_007441_280 0.10741454 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
9 Hb_000144_120 0.1080905786 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_001104_230 0.110262175 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
11 Hb_042474_010 0.1121779767 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
12 Hb_001493_150 0.1154645975 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
13 Hb_001318_050 0.1196853273 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_107298_010 0.1214984814 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
15 Hb_001731_030 0.1229260374 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
16 Hb_012545_090 0.1232425648 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
17 Hb_002093_060 0.1245862885 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_028872_110 0.1260384926 - - PREDICTED: uncharacterized protein LOC105644776 [Jatropha curcas]
19 Hb_003906_170 0.1262617502 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000327_250 0.1271574272 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]

Gene co-expression network

sample Hb_008226_070 Hb_008226_070 Hb_000159_120 Hb_000159_120 Hb_008226_070--Hb_000159_120 Hb_012022_080 Hb_012022_080 Hb_008226_070--Hb_012022_080 Hb_012760_040 Hb_012760_040 Hb_008226_070--Hb_012760_040 Hb_003226_120 Hb_003226_120 Hb_008226_070--Hb_003226_120 Hb_000190_090 Hb_000190_090 Hb_008226_070--Hb_000190_090 Hb_001221_020 Hb_001221_020 Hb_008226_070--Hb_001221_020 Hb_000159_120--Hb_012022_080 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_012022_080--Hb_000190_090 Hb_025336_020 Hb_025336_020 Hb_012022_080--Hb_025336_020 Hb_021576_010 Hb_021576_010 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_011224_160 Hb_011224_160 Hb_012022_080--Hb_011224_160 Hb_042474_010 Hb_042474_010 Hb_012760_040--Hb_042474_010 Hb_000144_120 Hb_000144_120 Hb_012760_040--Hb_000144_120 Hb_012760_040--Hb_000190_090 Hb_006916_110 Hb_006916_110 Hb_012760_040--Hb_006916_110 Hb_082741_010 Hb_082741_010 Hb_012760_040--Hb_082741_010 Hb_028872_110 Hb_028872_110 Hb_003226_120--Hb_028872_110 Hb_004079_080 Hb_004079_080 Hb_003226_120--Hb_004079_080 Hb_003226_120--Hb_000159_120 Hb_003226_120--Hb_003906_170 Hb_007943_160 Hb_007943_160 Hb_003226_120--Hb_007943_160 Hb_000190_090--Hb_042474_010 Hb_004096_110 Hb_004096_110 Hb_000190_090--Hb_004096_110 Hb_000190_090--Hb_011224_160 Hb_000190_090--Hb_021576_010 Hb_016347_010 Hb_016347_010 Hb_000190_090--Hb_016347_010 Hb_004880_150 Hb_004880_150 Hb_001221_020--Hb_004880_150 Hb_000841_050 Hb_000841_050 Hb_001221_020--Hb_000841_050 Hb_000025_190 Hb_000025_190 Hb_001221_020--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_001221_020--Hb_005648_010 Hb_003776_060 Hb_003776_060 Hb_001221_020--Hb_003776_060 Hb_001493_150 Hb_001493_150 Hb_001221_020--Hb_001493_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2958 26.5238 35.0263 68.0565 17.3254 19.0179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5876 31.3749 24.4808 120.36 34.4699

CAGE analysis