Hb_008226_080

Information

Type -
Description -
Location Contig8226: 51754-53933
Sequence    

Annotation

kegg
ID rcu:RCOM_0689690
description Protein LRP16, putative
nr
ID XP_002520860.1
description Protein LRP16, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4E1
description Protein LRP16, putative OS=Ricinus communis GN=RCOM_0689690 PE=4 SV=1
Gene Ontology
ID GO:0016779
description o-acetyl-adp-ribose deacetylase macrod2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59650: 51768-54034 , PASA_asmbl_59651: 51792-53141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_080 0.0 - - Protein LRP16, putative [Ricinus communis]
2 Hb_002016_080 0.1097098115 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
3 Hb_007850_080 0.1098374744 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
4 Hb_007192_100 0.1215436364 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
5 Hb_000413_280 0.1245038342 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
6 Hb_061195_020 0.1251883151 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
7 Hb_000922_040 0.1262269602 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
8 Hb_001199_040 0.1283327537 - - unnamed protein product [Coffea canephora]
9 Hb_003020_150 0.1293288063 - - tropinone reductase, putative [Ricinus communis]
10 Hb_002304_160 0.1293633942 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
11 Hb_007441_260 0.1313586504 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
12 Hb_000163_050 0.131875659 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
13 Hb_010560_030 0.1321907269 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
14 Hb_003462_120 0.1349524086 - - Acidic endochitinase [Theobroma cacao]
15 Hb_000327_380 0.1350960694 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
16 Hb_005285_030 0.1366347457 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
17 Hb_011021_040 0.1368951699 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
18 Hb_005656_100 0.1372414559 - - conserved hypothetical protein [Ricinus communis]
19 Hb_013399_050 0.1377293198 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
20 Hb_003783_030 0.1386755408 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]

Gene co-expression network

sample Hb_008226_080 Hb_008226_080 Hb_002016_080 Hb_002016_080 Hb_008226_080--Hb_002016_080 Hb_007850_080 Hb_007850_080 Hb_008226_080--Hb_007850_080 Hb_007192_100 Hb_007192_100 Hb_008226_080--Hb_007192_100 Hb_000413_280 Hb_000413_280 Hb_008226_080--Hb_000413_280 Hb_061195_020 Hb_061195_020 Hb_008226_080--Hb_061195_020 Hb_000922_040 Hb_000922_040 Hb_008226_080--Hb_000922_040 Hb_013405_140 Hb_013405_140 Hb_002016_080--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_002016_080--Hb_011485_020 Hb_002016_080--Hb_000922_040 Hb_000673_020 Hb_000673_020 Hb_002016_080--Hb_000673_020 Hb_002016_080--Hb_000413_280 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_005656_100 Hb_005656_100 Hb_007850_080--Hb_005656_100 Hb_003442_070 Hb_003442_070 Hb_007850_080--Hb_003442_070 Hb_033642_080 Hb_033642_080 Hb_007850_080--Hb_033642_080 Hb_004453_080 Hb_004453_080 Hb_007850_080--Hb_004453_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_000538_120 Hb_000538_120 Hb_000413_280--Hb_000538_120 Hb_011671_440 Hb_011671_440 Hb_000413_280--Hb_011671_440 Hb_000302_140 Hb_000302_140 Hb_000413_280--Hb_000302_140 Hb_000571_020 Hb_000571_020 Hb_000413_280--Hb_000571_020 Hb_004705_080 Hb_004705_080 Hb_000413_280--Hb_004705_080 Hb_061195_020--Hb_015807_100 Hb_029904_030 Hb_029904_030 Hb_061195_020--Hb_029904_030 Hb_000465_230 Hb_000465_230 Hb_061195_020--Hb_000465_230 Hb_061195_020--Hb_007850_080 Hb_000525_020 Hb_000525_020 Hb_061195_020--Hb_000525_020 Hb_061195_020--Hb_033642_080 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.14355 19.878 17.4445 23.9121 2.62254 5.33885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.2975 49.4153 31.9086 25.6113 9.57643

CAGE analysis