Hb_008226_100

Information

Type -
Description -
Location Contig8226: 61434-64186
Sequence    

Annotation

kegg
ID pop:POPTR_0077s002402
description hypothetical protein
nr
ID XP_012091218.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID U7E0A7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0077s002402g PE=4 SV=1
Gene Ontology
ID GO:0050896
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59654: 59935-62218 , PASA_asmbl_59655: 62566-62901 , PASA_asmbl_59656: 63076-63642 , PASA_asmbl_59657: 63334-63495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_100 0.0 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_000216_020 0.1239532792 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
3 Hb_060909_010 0.1250262061 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
4 Hb_004976_040 0.1315701826 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
5 Hb_011310_200 0.1382547246 - - grr1, plant, putative [Ricinus communis]
6 Hb_089100_040 0.1390694166 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
7 Hb_007253_040 0.1443796794 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
8 Hb_001408_150 0.1450558452 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
9 Hb_008175_030 0.1456423385 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
10 Hb_057079_020 0.1457681166 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000778_020 0.1462997382 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
12 Hb_002447_150 0.1494165054 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_002685_030 0.1512916666 - - PREDICTED: protein SMG7L [Jatropha curcas]
14 Hb_004648_100 0.1555171033 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
15 Hb_158696_010 0.1558896293 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
16 Hb_000362_090 0.1574685122 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
17 Hb_020178_050 0.1588181307 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
18 Hb_000059_130 0.1604544105 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
19 Hb_001369_160 0.1613262105 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
20 Hb_000022_180 0.1626190659 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008226_100 Hb_008226_100 Hb_000216_020 Hb_000216_020 Hb_008226_100--Hb_000216_020 Hb_060909_010 Hb_060909_010 Hb_008226_100--Hb_060909_010 Hb_004976_040 Hb_004976_040 Hb_008226_100--Hb_004976_040 Hb_011310_200 Hb_011310_200 Hb_008226_100--Hb_011310_200 Hb_089100_040 Hb_089100_040 Hb_008226_100--Hb_089100_040 Hb_007253_040 Hb_007253_040 Hb_008226_100--Hb_007253_040 Hb_000059_130 Hb_000059_130 Hb_000216_020--Hb_000059_130 Hb_003506_020 Hb_003506_020 Hb_000216_020--Hb_003506_020 Hb_000371_060 Hb_000371_060 Hb_000216_020--Hb_000371_060 Hb_000270_230 Hb_000270_230 Hb_000216_020--Hb_000270_230 Hb_008667_060 Hb_008667_060 Hb_000216_020--Hb_008667_060 Hb_000069_780 Hb_000069_780 Hb_000216_020--Hb_000069_780 Hb_001408_150 Hb_001408_150 Hb_060909_010--Hb_001408_150 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_000645_240 Hb_000645_240 Hb_004976_040--Hb_000645_240 Hb_000010_350 Hb_000010_350 Hb_004976_040--Hb_000010_350 Hb_000866_090 Hb_000866_090 Hb_004976_040--Hb_000866_090 Hb_004126_080 Hb_004126_080 Hb_004976_040--Hb_004126_080 Hb_004976_040--Hb_089100_040 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_057079_020 Hb_057079_020 Hb_011310_200--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_011310_200--Hb_001410_010 Hb_000866_370 Hb_000866_370 Hb_011310_200--Hb_000866_370 Hb_011310_200--Hb_000216_020 Hb_001544_080 Hb_001544_080 Hb_011310_200--Hb_001544_080 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_089100_040--Hb_000866_370 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030 Hb_007253_040--Hb_000532_130 Hb_007259_020 Hb_007259_020 Hb_007253_040--Hb_007259_020 Hb_008175_030 Hb_008175_030 Hb_007253_040--Hb_008175_030 Hb_007253_040--Hb_060909_010 Hb_007618_010 Hb_007618_010 Hb_007253_040--Hb_007618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150768 3.30854 0.768357 1.27004 0.456375 0.752211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156505 0.0246254 0.18505 1.6514 0.669673

CAGE analysis