Hb_008226_120

Information

Type -
Description -
Location Contig8226: 66359-70120
Sequence    

Annotation

kegg
ID rcu:RCOM_0689670
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_002520858.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9FKG6
description U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1
trembl
ID B9S4D9
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0689670 PE=4 SV=1
Gene Ontology
ID GO:0004715
description u-box domain-containing protein 52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59659: 68830-69152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_120 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001894_040 0.0873191183 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
3 Hb_038777_010 0.0958425991 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
4 Hb_001862_060 0.0981689727 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
5 Hb_008406_020 0.1003099537 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
6 Hb_009581_040 0.1010722689 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
7 Hb_012807_060 0.102154428 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_002276_100 0.1111310698 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
9 Hb_074312_020 0.1119035626 - - cytochrome P450, putative [Ricinus communis]
10 Hb_003430_020 0.1125379617 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
11 Hb_022501_020 0.115908374 - - AMP dependent CoA ligase, putative [Ricinus communis]
12 Hb_000579_180 0.1163713796 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
13 Hb_000085_230 0.1182990909 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
14 Hb_046101_010 0.1223605957 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
15 Hb_003376_200 0.1236918811 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_006241_010 0.1246921461 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
17 Hb_020285_010 0.1251512762 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
18 Hb_009581_050 0.1293376496 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
19 Hb_134017_010 0.1309241867 - - kinase, putative [Ricinus communis]
20 Hb_003052_120 0.1335869518 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]

Gene co-expression network

sample Hb_008226_120 Hb_008226_120 Hb_001894_040 Hb_001894_040 Hb_008226_120--Hb_001894_040 Hb_038777_010 Hb_038777_010 Hb_008226_120--Hb_038777_010 Hb_001862_060 Hb_001862_060 Hb_008226_120--Hb_001862_060 Hb_008406_020 Hb_008406_020 Hb_008226_120--Hb_008406_020 Hb_009581_040 Hb_009581_040 Hb_008226_120--Hb_009581_040 Hb_012807_060 Hb_012807_060 Hb_008226_120--Hb_012807_060 Hb_000085_230 Hb_000085_230 Hb_001894_040--Hb_000085_230 Hb_000579_180 Hb_000579_180 Hb_001894_040--Hb_000579_180 Hb_046101_010 Hb_046101_010 Hb_001894_040--Hb_046101_010 Hb_001894_040--Hb_001862_060 Hb_001636_010 Hb_001636_010 Hb_001894_040--Hb_001636_010 Hb_020285_010 Hb_020285_010 Hb_038777_010--Hb_020285_010 Hb_005357_020 Hb_005357_020 Hb_038777_010--Hb_005357_020 Hb_000497_100 Hb_000497_100 Hb_038777_010--Hb_000497_100 Hb_038777_010--Hb_001862_060 Hb_007894_030 Hb_007894_030 Hb_038777_010--Hb_007894_030 Hb_000028_460 Hb_000028_460 Hb_038777_010--Hb_000028_460 Hb_074312_020 Hb_074312_020 Hb_001862_060--Hb_074312_020 Hb_003439_020 Hb_003439_020 Hb_001862_060--Hb_003439_020 Hb_134017_010 Hb_134017_010 Hb_001862_060--Hb_134017_010 Hb_001862_060--Hb_009581_040 Hb_008406_020--Hb_009581_040 Hb_000907_120 Hb_000907_120 Hb_008406_020--Hb_000907_120 Hb_002276_100 Hb_002276_100 Hb_008406_020--Hb_002276_100 Hb_003430_020 Hb_003430_020 Hb_008406_020--Hb_003430_020 Hb_068332_010 Hb_068332_010 Hb_008406_020--Hb_068332_010 Hb_009581_040--Hb_003430_020 Hb_009581_040--Hb_074312_020 Hb_000255_020 Hb_000255_020 Hb_009581_040--Hb_000255_020 Hb_009581_040--Hb_002276_100 Hb_009581_050 Hb_009581_050 Hb_012807_060--Hb_009581_050 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_002551_090 Hb_002551_090 Hb_012807_060--Hb_002551_090 Hb_012807_060--Hb_000579_180 Hb_012807_060--Hb_003430_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0102596 1.9491 0.44314 0.955913 0.048672 0.0512792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0376067 0 0 1.85745 0.50253

CAGE analysis