Hb_008232_010

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig8232: 6650-9568
Sequence    

Annotation

kegg
ID rcu:RCOM_0482900
description GATA transcription factor, putative
nr
ID XP_002527370.1
description GATA transcription factor, putative [Ricinus communis]
swissprot
ID Q9LRH6
description GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2
trembl
ID B9SN01
description GATA transcription factor, putative OS=Ricinus communis GN=RCOM_0482900 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59669: 6902-23961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008232_010 0.0 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
2 Hb_000982_080 0.0601347684 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
3 Hb_001123_160 0.0628608512 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_011344_190 0.0631187345 - - PREDICTED: maspardin [Jatropha curcas]
5 Hb_004672_010 0.0752584489 - - ecotropic viral integration site, putative [Ricinus communis]
6 Hb_003622_040 0.0758896202 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
7 Hb_015183_060 0.0765894731 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
8 Hb_001222_080 0.0772238073 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
9 Hb_005488_200 0.0790529397 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
10 Hb_000820_090 0.079454982 - - -
11 Hb_000934_190 0.0809139567 - - SER/ARG-rich protein 34A [Theobroma cacao]
12 Hb_017131_010 0.0815115939 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
13 Hb_003376_250 0.0836724372 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
14 Hb_000673_020 0.0847808172 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
15 Hb_002016_080 0.0858558166 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
16 Hb_000922_040 0.0912684523 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
17 Hb_034380_020 0.0915513528 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
18 Hb_001218_030 0.0916745996 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
19 Hb_000254_050 0.0920737116 - - hypothetical protein VITISV_010510 [Vitis vinifera]
20 Hb_003126_070 0.0921377676 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008232_010 Hb_008232_010 Hb_000982_080 Hb_000982_080 Hb_008232_010--Hb_000982_080 Hb_001123_160 Hb_001123_160 Hb_008232_010--Hb_001123_160 Hb_011344_190 Hb_011344_190 Hb_008232_010--Hb_011344_190 Hb_004672_010 Hb_004672_010 Hb_008232_010--Hb_004672_010 Hb_003622_040 Hb_003622_040 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_003376_250 Hb_003376_250 Hb_000982_080--Hb_003376_250 Hb_000982_080--Hb_011344_190 Hb_005488_200 Hb_005488_200 Hb_000982_080--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_000982_080--Hb_001195_200 Hb_006420_080 Hb_006420_080 Hb_000982_080--Hb_006420_080 Hb_001123_160--Hb_003622_040 Hb_003291_020 Hb_003291_020 Hb_001123_160--Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_011344_190--Hb_003376_250 Hb_011344_190--Hb_005488_200 Hb_003633_050 Hb_003633_050 Hb_011344_190--Hb_003633_050 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_005054_210 Hb_005054_210 Hb_003622_040--Hb_005054_210 Hb_000934_190 Hb_000934_190 Hb_003622_040--Hb_000934_190 Hb_003622_040--Hb_000300_430 Hb_003622_040--Hb_011344_190 Hb_015183_060--Hb_000982_080 Hb_000673_020 Hb_000673_020 Hb_015183_060--Hb_000673_020 Hb_002016_080 Hb_002016_080 Hb_015183_060--Hb_002016_080 Hb_001892_070 Hb_001892_070 Hb_015183_060--Hb_001892_070 Hb_000920_200 Hb_000920_200 Hb_015183_060--Hb_000920_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4683 6.8539 11.7017 21.0827 6.31516 10.4203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.786 29.9304 25.7214 20.6467 16.6192

CAGE analysis