Hb_008245_010

Information

Type -
Description -
Location Contig8245: 7678-13213
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20520g
description POPTRDRAFT_833791; transducin family protein
nr
ID XP_012088447.1
description PREDICTED: protein NEDD1 [Jatropha curcas]
swissprot
ID Q3B7M6
description Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 SV=1
trembl
ID A0A067LCA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01368 PE=4 SV=1
Gene Ontology
ID GO:0005828
description protein nedd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59672: 8298-11971 , PASA_asmbl_59673: 11991-13681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008245_010 0.0 - - PREDICTED: protein NEDD1 [Jatropha curcas]
2 Hb_002631_010 0.0765201354 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
3 Hb_000521_130 0.1025275953 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
4 Hb_000252_100 0.1033505109 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
5 Hb_000173_410 0.1039428132 - - PREDICTED: BI1-like protein [Jatropha curcas]
6 Hb_006698_080 0.1082800714 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
7 Hb_005765_050 0.1101758424 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
8 Hb_000094_210 0.1103587165 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
9 Hb_017131_010 0.1114121536 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
10 Hb_003305_040 0.1118846724 - - AP47/50p mRNA family protein [Populus trichocarpa]
11 Hb_001218_030 0.1119269127 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
12 Hb_000212_450 0.1122534471 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
13 Hb_005306_180 0.112374891 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
14 Hb_076233_040 0.1128435149 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
15 Hb_005054_210 0.1138304493 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
16 Hb_002681_200 0.1139690783 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
17 Hb_010407_140 0.1144463691 - - PREDICTED: malate dehydrogenase [Jatropha curcas]
18 Hb_007460_020 0.1147669338 - - PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 1 [Jatropha curcas]
19 Hb_010560_050 0.1160355463 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
20 Hb_000454_090 0.1172492359 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]

Gene co-expression network

sample Hb_008245_010 Hb_008245_010 Hb_002631_010 Hb_002631_010 Hb_008245_010--Hb_002631_010 Hb_000521_130 Hb_000521_130 Hb_008245_010--Hb_000521_130 Hb_000252_100 Hb_000252_100 Hb_008245_010--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_008245_010--Hb_000173_410 Hb_006698_080 Hb_006698_080 Hb_008245_010--Hb_006698_080 Hb_005765_050 Hb_005765_050 Hb_008245_010--Hb_005765_050 Hb_010560_050 Hb_010560_050 Hb_002631_010--Hb_010560_050 Hb_000094_210 Hb_000094_210 Hb_002631_010--Hb_000094_210 Hb_000700_040 Hb_000700_040 Hb_002631_010--Hb_000700_040 Hb_000025_190 Hb_000025_190 Hb_002631_010--Hb_000025_190 Hb_017131_010 Hb_017131_010 Hb_002631_010--Hb_017131_010 Hb_000212_450 Hb_000212_450 Hb_000521_130--Hb_000212_450 Hb_000521_130--Hb_000252_100 Hb_000140_380 Hb_000140_380 Hb_000521_130--Hb_000140_380 Hb_004800_100 Hb_004800_100 Hb_000521_130--Hb_004800_100 Hb_000521_130--Hb_017131_010 Hb_000521_130--Hb_000173_410 Hb_000454_090 Hb_000454_090 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_003305_040 Hb_003305_040 Hb_000252_100--Hb_003305_040 Hb_000252_100--Hb_000140_380 Hb_000060_050 Hb_000060_050 Hb_000252_100--Hb_000060_050 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_000173_410--Hb_000454_090 Hb_000220_100 Hb_000220_100 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_000173_410--Hb_005765_050 Hb_004078_040 Hb_004078_040 Hb_000173_410--Hb_004078_040 Hb_034380_020 Hb_034380_020 Hb_006698_080--Hb_034380_020 Hb_001085_240 Hb_001085_240 Hb_006698_080--Hb_001085_240 Hb_019654_030 Hb_019654_030 Hb_006698_080--Hb_019654_030 Hb_001828_150 Hb_001828_150 Hb_006698_080--Hb_001828_150 Hb_006698_080--Hb_002631_010 Hb_000608_050 Hb_000608_050 Hb_005765_050--Hb_000608_050 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_005765_050--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01438 1.29707 3.68067 6.44427 1.4348 2.5237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.59705 2.82921 5.94111 4.75914 2.8754

CAGE analysis