Hb_008246_030

Information

Type transcription factor
Description TF Family: C3H
Location Contig8246: 16603-21925
Sequence    

Annotation

kegg
ID rcu:RCOM_1451400
description tRNA-dihydrouridine synthase, putative
nr
ID XP_002513011.1
description tRNA-dihydrouridine synthase, putative [Ricinus communis]
swissprot
ID Q9T0J6
description tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis thaliana GN=At4g38890 PE=1 SV=2
trembl
ID B9RG59
description tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ricinus communis GN=RCOM_1451400 PE=3 SV=1
Gene Ontology
ID GO:0017150
description trna-dihydrouridine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59675: 16624-21725 , PASA_asmbl_59676: 22541-26057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008246_030 0.0 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
2 Hb_000363_380 0.0847008134 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
3 Hb_004920_060 0.0884856332 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
4 Hb_002612_010 0.0951928715 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
5 Hb_002301_270 0.0984827716 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
6 Hb_012404_070 0.1050346707 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
7 Hb_017895_020 0.1080201752 - - Vacuolar protein sorting protein, putative [Ricinus communis]
8 Hb_008725_130 0.1105560828 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
9 Hb_003436_050 0.1132854597 - - arf gtpase-activating protein, putative [Ricinus communis]
10 Hb_005408_020 0.1142336098 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003529_130 0.1142681321 - - PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X1 [Jatropha curcas]
12 Hb_002708_020 0.1144246396 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
13 Hb_022693_030 0.1163912074 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
14 Hb_028872_120 0.1166810201 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
15 Hb_002188_090 0.1195466892 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
16 Hb_002307_350 0.1196058934 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
17 Hb_011609_170 0.1200804564 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_000120_510 0.1205560439 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
19 Hb_035318_010 0.1208954185 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
20 Hb_006452_160 0.1237655583 - - structural constituent of ribosome, putative [Ricinus communis]

Gene co-expression network

sample Hb_008246_030 Hb_008246_030 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_004920_060 Hb_004920_060 Hb_008246_030--Hb_004920_060 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_017895_020 Hb_017895_020 Hb_008246_030--Hb_017895_020 Hb_000363_380--Hb_017895_020 Hb_028872_120 Hb_028872_120 Hb_000363_380--Hb_028872_120 Hb_003029_130 Hb_003029_130 Hb_000363_380--Hb_003029_130 Hb_001178_150 Hb_001178_150 Hb_000363_380--Hb_001178_150 Hb_000487_220 Hb_000487_220 Hb_000363_380--Hb_000487_220 Hb_078477_040 Hb_078477_040 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_006829_090 Hb_006829_090 Hb_002612_010--Hb_006829_090 Hb_002612_010--Hb_004920_060 Hb_033594_020 Hb_033594_020 Hb_002612_010--Hb_033594_020 Hb_000685_080 Hb_000685_080 Hb_002612_010--Hb_000685_080 Hb_001473_080 Hb_001473_080 Hb_002612_010--Hb_001473_080 Hb_002301_270--Hb_028872_120 Hb_009151_020 Hb_009151_020 Hb_002301_270--Hb_009151_020 Hb_000347_570 Hb_000347_570 Hb_002301_270--Hb_000347_570 Hb_022693_030 Hb_022693_030 Hb_002301_270--Hb_022693_030 Hb_002301_270--Hb_001178_150 Hb_007943_120 Hb_007943_120 Hb_002301_270--Hb_007943_120 Hb_003436_050 Hb_003436_050 Hb_012404_070--Hb_003436_050 Hb_001163_120 Hb_001163_120 Hb_012404_070--Hb_001163_120 Hb_005408_020 Hb_005408_020 Hb_012404_070--Hb_005408_020 Hb_002249_120 Hb_002249_120 Hb_012404_070--Hb_002249_120 Hb_011609_170 Hb_011609_170 Hb_012404_070--Hb_011609_170 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_017895_020--Hb_000329_130 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_017895_020--Hb_008725_130 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.6102 35.7502 34.4399 14.537 58.2959 67.6269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87142 11.0926 7.54982 11.9014 19.4512

CAGE analysis