Hb_008247_010

Information

Type -
Description -
Location Contig8247: 9275-12593
Sequence    

Annotation

kegg
ID rcu:RCOM_0757640
description leucyl-tRNA synthetase, putative (EC:6.1.1.4)
nr
ID XP_012066702.1
description PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q8BMJ2
description Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=1 SV=2
trembl
ID A0A067LEE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00261 PE=3 SV=1
Gene Ontology
ID GO:0005829
description leucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59681: 8147-8541 , PASA_asmbl_59683: 11400-11549 , PASA_asmbl_59685: 12100-12282 , PASA_asmbl_59686: 12368-12548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008247_010 0.0 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_010436_030 0.0808804909 - - Ribonuclease III, putative [Ricinus communis]
3 Hb_033834_010 0.0999464983 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_004048_090 0.1042787079 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
5 Hb_003001_150 0.106006037 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000009_210 0.1068217238 - - PREDICTED: pentatricopeptide repeat-containing protein At2g01390 [Jatropha curcas]
7 Hb_003544_100 0.1081344255 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
8 Hb_123777_030 0.1099669628 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
9 Hb_011139_030 0.1128429504 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
10 Hb_003938_080 0.1137323854 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
11 Hb_003406_040 0.1142919312 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
12 Hb_000005_380 0.1145497937 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
13 Hb_002255_070 0.1153222896 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
14 Hb_015884_030 0.1169059236 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
15 Hb_000195_020 0.1171975981 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
16 Hb_000390_070 0.1183425025 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
17 Hb_109168_010 0.1194787598 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
18 Hb_000627_080 0.1194819472 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_004096_020 0.1203025565 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
20 Hb_041091_010 0.1227764912 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_008247_010 Hb_008247_010 Hb_010436_030 Hb_010436_030 Hb_008247_010--Hb_010436_030 Hb_033834_010 Hb_033834_010 Hb_008247_010--Hb_033834_010 Hb_004048_090 Hb_004048_090 Hb_008247_010--Hb_004048_090 Hb_003001_150 Hb_003001_150 Hb_008247_010--Hb_003001_150 Hb_000009_210 Hb_000009_210 Hb_008247_010--Hb_000009_210 Hb_003544_100 Hb_003544_100 Hb_008247_010--Hb_003544_100 Hb_010436_020 Hb_010436_020 Hb_010436_030--Hb_010436_020 Hb_010436_030--Hb_003001_150 Hb_000005_380 Hb_000005_380 Hb_010436_030--Hb_000005_380 Hb_004440_100 Hb_004440_100 Hb_010436_030--Hb_004440_100 Hb_123777_030 Hb_123777_030 Hb_010436_030--Hb_123777_030 Hb_005730_030 Hb_005730_030 Hb_033834_010--Hb_005730_030 Hb_175338_020 Hb_175338_020 Hb_033834_010--Hb_175338_020 Hb_004096_020 Hb_004096_020 Hb_033834_010--Hb_004096_020 Hb_001541_020 Hb_001541_020 Hb_033834_010--Hb_001541_020 Hb_000195_020 Hb_000195_020 Hb_033834_010--Hb_000195_020 Hb_002301_220 Hb_002301_220 Hb_033834_010--Hb_002301_220 Hb_041091_010 Hb_041091_010 Hb_004048_090--Hb_041091_010 Hb_000803_150 Hb_000803_150 Hb_004048_090--Hb_000803_150 Hb_002863_040 Hb_002863_040 Hb_004048_090--Hb_002863_040 Hb_004048_090--Hb_000195_020 Hb_003938_080 Hb_003938_080 Hb_004048_090--Hb_003938_080 Hb_000538_200 Hb_000538_200 Hb_004048_090--Hb_000538_200 Hb_003001_150--Hb_003544_100 Hb_002276_060 Hb_002276_060 Hb_003001_150--Hb_002276_060 Hb_003052_150 Hb_003052_150 Hb_003001_150--Hb_003052_150 Hb_001136_100 Hb_001136_100 Hb_003001_150--Hb_001136_100 Hb_000729_050 Hb_000729_050 Hb_003001_150--Hb_000729_050 Hb_007943_100 Hb_007943_100 Hb_003001_150--Hb_007943_100 Hb_000390_070 Hb_000390_070 Hb_000009_210--Hb_000390_070 Hb_000009_210--Hb_033834_010 Hb_000627_080 Hb_000627_080 Hb_000009_210--Hb_000627_080 Hb_004137_060 Hb_004137_060 Hb_000009_210--Hb_004137_060 Hb_000832_130 Hb_000832_130 Hb_000009_210--Hb_000832_130 Hb_126643_010 Hb_126643_010 Hb_000009_210--Hb_126643_010 Hb_009411_010 Hb_009411_010 Hb_003544_100--Hb_009411_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003544_100--Hb_003938_080 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003216_080 Hb_003216_080 Hb_003544_100--Hb_003216_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.40736 1.81104 1.85634 0.909962 5.71542 7.27759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44759 2.09783 5.69693 2.35733 2.79202

CAGE analysis