Hb_008247_020

Information

Type -
Description -
Location Contig8247: 16382-20153
Sequence    

Annotation

kegg
ID rcu:RCOM_0714000
description Cyclin-L2, putative
nr
ID XP_012078543.1
description PREDICTED: cyclin-L1-1-like [Jatropha curcas]
swissprot
ID Q8RWV3
description Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=1 SV=2
trembl
ID A0A067KJV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14762 PE=3 SV=1
Gene Ontology
ID GO:0009506
description cyclin-l1-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59687: 16405-20153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008247_020 0.0 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
2 Hb_000317_510 0.0692554081 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
3 Hb_053079_020 0.0697951558 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
4 Hb_000739_180 0.07466197 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
5 Hb_103747_020 0.0768542411 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
6 Hb_007929_080 0.0827800406 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
7 Hb_001405_190 0.0828924157 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
8 Hb_143766_110 0.0830299748 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
9 Hb_001318_070 0.0841241936 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]
10 Hb_002686_040 0.084193023 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
11 Hb_000028_510 0.0862050279 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
12 Hb_010407_050 0.0886112803 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
13 Hb_003186_020 0.0888212215 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
14 Hb_001377_110 0.0892905605 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
15 Hb_000162_030 0.0898048925 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
16 Hb_000243_210 0.0898799495 - - protein with unknown function [Ricinus communis]
17 Hb_085742_010 0.0901646424 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
18 Hb_000373_080 0.0903850732 - - PREDICTED: serine decarboxylase [Jatropha curcas]
19 Hb_001268_280 0.0912836326 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000115_280 0.0913931324 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_008247_020 Hb_008247_020 Hb_000317_510 Hb_000317_510 Hb_008247_020--Hb_000317_510 Hb_053079_020 Hb_053079_020 Hb_008247_020--Hb_053079_020 Hb_000739_180 Hb_000739_180 Hb_008247_020--Hb_000739_180 Hb_103747_020 Hb_103747_020 Hb_008247_020--Hb_103747_020 Hb_007929_080 Hb_007929_080 Hb_008247_020--Hb_007929_080 Hb_001405_190 Hb_001405_190 Hb_008247_020--Hb_001405_190 Hb_000317_510--Hb_103747_020 Hb_000373_080 Hb_000373_080 Hb_000317_510--Hb_000373_080 Hb_002326_110 Hb_002326_110 Hb_000317_510--Hb_002326_110 Hb_000362_170 Hb_000362_170 Hb_000317_510--Hb_000362_170 Hb_001005_030 Hb_001005_030 Hb_000317_510--Hb_001005_030 Hb_002054_050 Hb_002054_050 Hb_000317_510--Hb_002054_050 Hb_000115_280 Hb_000115_280 Hb_053079_020--Hb_000115_280 Hb_000214_050 Hb_000214_050 Hb_053079_020--Hb_000214_050 Hb_017151_010 Hb_017151_010 Hb_053079_020--Hb_017151_010 Hb_003186_020 Hb_003186_020 Hb_053079_020--Hb_003186_020 Hb_000243_210 Hb_000243_210 Hb_053079_020--Hb_000243_210 Hb_000120_910 Hb_000120_910 Hb_000739_180--Hb_000120_910 Hb_001257_030 Hb_001257_030 Hb_000739_180--Hb_001257_030 Hb_085742_010 Hb_085742_010 Hb_000739_180--Hb_085742_010 Hb_009083_070 Hb_009083_070 Hb_000739_180--Hb_009083_070 Hb_002276_240 Hb_002276_240 Hb_000739_180--Hb_002276_240 Hb_002014_040 Hb_002014_040 Hb_103747_020--Hb_002014_040 Hb_002686_040 Hb_002686_040 Hb_103747_020--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_103747_020--Hb_005723_020 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_008226_090 Hb_008226_090 Hb_103747_020--Hb_008226_090 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_010362_030 Hb_010362_030 Hb_001405_190--Hb_010362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.2213 68.326 85.3858 48.8646 62.9826 62.0707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5189 23.5811 53.631 50.8937 56.5682

CAGE analysis