Hb_008253_010

Information

Type -
Description -
Location Contig8253: 8303-16359
Sequence    

Annotation

kegg
ID rcu:RCOM_0530650
description hypothetical protein
nr
ID XP_012071208.1
description PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LG95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10183 PE=4 SV=1
Gene Ontology
ID GO:0070652
description haus augmin-like complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59701: 8370-16333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008253_010 0.0 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
2 Hb_009265_080 0.0550647719 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
3 Hb_002007_350 0.0565468251 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
4 Hb_004678_060 0.0579652828 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
5 Hb_007336_020 0.0646831699 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
6 Hb_007590_080 0.0674626768 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
7 Hb_134364_010 0.0716643103 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
8 Hb_011942_080 0.0721299354 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
9 Hb_000368_020 0.074599939 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
10 Hb_000794_050 0.0772660751 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
11 Hb_000481_040 0.0773618665 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
12 Hb_000322_100 0.0813449174 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
13 Hb_031939_010 0.0823980889 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_003656_160 0.0836905724 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
15 Hb_008803_090 0.0841195553 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
16 Hb_000498_010 0.0843253058 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_007026_030 0.084509271 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
18 Hb_002024_040 0.0849975463 - - PREDICTED: adenosine kinase [Jatropha curcas]
19 Hb_007632_020 0.085478531 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
20 Hb_002400_180 0.0862109111 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008253_010 Hb_008253_010 Hb_009265_080 Hb_009265_080 Hb_008253_010--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_008253_010--Hb_002007_350 Hb_004678_060 Hb_004678_060 Hb_008253_010--Hb_004678_060 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_008253_010--Hb_007590_080 Hb_134364_010 Hb_134364_010 Hb_008253_010--Hb_134364_010 Hb_009265_080--Hb_002007_350 Hb_009265_080--Hb_004678_060 Hb_002400_180 Hb_002400_180 Hb_009265_080--Hb_002400_180 Hb_000803_300 Hb_000803_300 Hb_009265_080--Hb_000803_300 Hb_004195_280 Hb_004195_280 Hb_009265_080--Hb_004195_280 Hb_002007_350--Hb_004678_060 Hb_002007_350--Hb_007590_080 Hb_002007_350--Hb_000803_300 Hb_003656_160 Hb_003656_160 Hb_002007_350--Hb_003656_160 Hb_004678_060--Hb_002400_180 Hb_004678_060--Hb_003656_160 Hb_003006_060 Hb_003006_060 Hb_004678_060--Hb_003006_060 Hb_007336_020--Hb_007590_080 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_011942_080 Hb_011942_080 Hb_007336_020--Hb_011942_080 Hb_001369_180 Hb_001369_180 Hb_007336_020--Hb_001369_180 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_007590_080--Hb_000803_300 Hb_001863_260 Hb_001863_260 Hb_134364_010--Hb_001863_260 Hb_000364_080 Hb_000364_080 Hb_134364_010--Hb_000364_080 Hb_134364_010--Hb_009265_080 Hb_010423_020 Hb_010423_020 Hb_134364_010--Hb_010423_020 Hb_002942_160 Hb_002942_160 Hb_134364_010--Hb_002942_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9213 17.0233 17.0703 9.81125 31.1917 35.9288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5097 14.7552 15.953 9.92224 11.1019

CAGE analysis