Hb_008269_020

Information

Type -
Description -
Location Contig8269: 38523-43161
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008269_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000118_050 6.74888e-05 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_065059_010 0.0003254859 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
4 Hb_084299_010 0.0005942157 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
5 Hb_002656_040 0.0008371779 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
6 Hb_000001_030 0.0010643367 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_099586_010 0.0035843878 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_009813_040 0.004851656 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
9 Hb_072825_010 0.0071293023 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
10 Hb_000283_160 0.0105931629 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
11 Hb_002982_060 0.0112371409 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
12 Hb_031104_010 0.0137973528 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_068578_010 0.0152858852 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
14 Hb_001629_070 0.015545129 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
15 Hb_048482_010 0.0163449836 - - -
16 Hb_104984_010 0.021046213 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
17 Hb_000206_260 0.021934505 - - cysteine protease, putative [Ricinus communis]
18 Hb_189099_010 0.0245109513 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
19 Hb_041626_010 0.024748192 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_073373_010 0.0253241741 - - hypothetical protein JCGZ_11284 [Jatropha curcas]

Gene co-expression network

sample Hb_008269_020 Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_008269_020--Hb_000118_050 Hb_065059_010 Hb_065059_010 Hb_008269_020--Hb_065059_010 Hb_084299_010 Hb_084299_010 Hb_008269_020--Hb_084299_010 Hb_002656_040 Hb_002656_040 Hb_008269_020--Hb_002656_040 Hb_000001_030 Hb_000001_030 Hb_008269_020--Hb_000001_030 Hb_099586_010 Hb_099586_010 Hb_008269_020--Hb_099586_010 Hb_000118_050--Hb_065059_010 Hb_000118_050--Hb_084299_010 Hb_000118_050--Hb_002656_040 Hb_000118_050--Hb_000001_030 Hb_000118_050--Hb_099586_010 Hb_065059_010--Hb_084299_010 Hb_065059_010--Hb_002656_040 Hb_065059_010--Hb_000001_030 Hb_065059_010--Hb_099586_010 Hb_084299_010--Hb_002656_040 Hb_084299_010--Hb_000001_030 Hb_084299_010--Hb_099586_010 Hb_002656_040--Hb_000001_030 Hb_002656_040--Hb_099586_010 Hb_000001_030--Hb_099586_010 Hb_009813_040 Hb_009813_040 Hb_099586_010--Hb_009813_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00453877 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0175724

CAGE analysis