Hb_008277_030

Information

Type -
Description -
Location Contig8277: 11571-12264
Sequence    

Annotation

kegg
ID cic:CICLE_v10024419mg
description hypothetical protein
nr
ID XP_006443009.1
description hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4VSZ2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024419mg PE=4 SV=1
Gene Ontology
ID GO:0016740
description zinc finger ccch domain-containing protein 48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008277_030 0.0 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
2 Hb_000265_130 0.1632866254 - - -
3 Hb_000261_360 0.1660677487 - - unknown [Lotus japonicus]
4 Hb_073559_010 0.1671306449 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
5 Hb_000204_020 0.1819556337 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
6 Hb_032531_060 0.1947035798 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
7 Hb_000248_030 0.1971684022 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
8 Hb_061581_010 0.1980074656 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
9 Hb_005731_140 0.1998940395 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
10 Hb_000001_040 0.200459955 - - unnamed protein product [Coffea canephora]
11 Hb_121236_010 0.2008924161 - - geranyl-diphosphate synthase [Hevea brasiliensis]
12 Hb_002783_060 0.2053777245 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
13 Hb_115919_010 0.205454853 - - unknown [Lotus japonicus]
14 Hb_106005_010 0.2055497762 - - EG5651 [Manihot esculenta]
15 Hb_166480_010 0.2060146099 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
16 Hb_000810_020 0.2072308308 - - -
17 Hb_002960_050 0.2079410877 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
18 Hb_000289_080 0.2104361747 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006995_010 0.213413575 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
20 Hb_124587_010 0.2134584533 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_008277_030 Hb_008277_030 Hb_000265_130 Hb_000265_130 Hb_008277_030--Hb_000265_130 Hb_000261_360 Hb_000261_360 Hb_008277_030--Hb_000261_360 Hb_073559_010 Hb_073559_010 Hb_008277_030--Hb_073559_010 Hb_000204_020 Hb_000204_020 Hb_008277_030--Hb_000204_020 Hb_032531_060 Hb_032531_060 Hb_008277_030--Hb_032531_060 Hb_000248_030 Hb_000248_030 Hb_008277_030--Hb_000248_030 Hb_000001_040 Hb_000001_040 Hb_000265_130--Hb_000001_040 Hb_000265_130--Hb_000261_360 Hb_010504_030 Hb_010504_030 Hb_000265_130--Hb_010504_030 Hb_003581_010 Hb_003581_010 Hb_000265_130--Hb_003581_010 Hb_000176_120 Hb_000176_120 Hb_000265_130--Hb_000176_120 Hb_007188_020 Hb_007188_020 Hb_000265_130--Hb_007188_020 Hb_000261_360--Hb_010504_030 Hb_000261_360--Hb_000176_120 Hb_000261_360--Hb_000001_040 Hb_166480_010 Hb_166480_010 Hb_000261_360--Hb_166480_010 Hb_000248_010 Hb_000248_010 Hb_073559_010--Hb_000248_010 Hb_088065_010 Hb_088065_010 Hb_073559_010--Hb_088065_010 Hb_002960_050 Hb_002960_050 Hb_073559_010--Hb_002960_050 Hb_073559_010--Hb_000248_030 Hb_168737_010 Hb_168737_010 Hb_073559_010--Hb_168737_010 Hb_005965_010 Hb_005965_010 Hb_073559_010--Hb_005965_010 Hb_000289_080 Hb_000289_080 Hb_000204_020--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_000204_020--Hb_003029_100 Hb_006995_010 Hb_006995_010 Hb_000204_020--Hb_006995_010 Hb_005933_010 Hb_005933_010 Hb_000204_020--Hb_005933_010 Hb_169170_010 Hb_169170_010 Hb_000204_020--Hb_169170_010 Hb_034579_010 Hb_034579_010 Hb_032531_060--Hb_034579_010 Hb_005731_140 Hb_005731_140 Hb_032531_060--Hb_005731_140 Hb_061581_010 Hb_061581_010 Hb_032531_060--Hb_061581_010 Hb_124141_010 Hb_124141_010 Hb_032531_060--Hb_124141_010 Hb_032531_060--Hb_000248_030 Hb_032531_060--Hb_005933_010 Hb_000248_030--Hb_000248_010 Hb_000248_030--Hb_005933_010 Hb_001235_060 Hb_001235_060 Hb_000248_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_000248_030--Hb_122567_020 Hb_000248_030--Hb_002960_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.512065 0 0 1.07153 0.428599 4.39653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.20851 0.542417 0.443869 0.229401 0

CAGE analysis