Hb_008279_030

Information

Type -
Description -
Location Contig8279: 33017-34615
Sequence    

Annotation

kegg
ID rcu:RCOM_1152910
description hypothetical protein
nr
ID XP_002524913.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9SFZ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1152910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59745: 32693-33186
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008279_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003813_180 0.173172528 - - sterol desaturase, putative [Ricinus communis]
3 Hb_011004_050 0.1900451765 - - PREDICTED: kinesin-13A [Jatropha curcas]
4 Hb_002662_040 0.197791724 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
5 Hb_006634_100 0.2047303864 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004163_030 0.2079180398 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
7 Hb_000011_410 0.2186555092 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004093_030 0.2200010998 - - hypothetical protein RCOM_1406750 [Ricinus communis]
9 Hb_000853_310 0.2233392834 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Populus euphratica]
10 Hb_005622_020 0.2270934382 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
11 Hb_002701_230 0.2282855244 - - PREDICTED: uncharacterized protein LOC105646833 [Jatropha curcas]
12 Hb_008725_080 0.2285759867 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
13 Hb_001579_300 0.2285981165 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
14 Hb_000230_190 0.2351566765 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
15 Hb_005144_120 0.2355040171 - - PREDICTED: probable glucuronoxylan glucuronosyltransferase IRX7 [Jatropha curcas]
16 Hb_000527_080 0.2360601312 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
17 Hb_000526_010 0.2365784017 - - PREDICTED: uroporphyrinogen-III C-methyltransferase [Jatropha curcas]
18 Hb_001266_150 0.2365857526 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
19 Hb_000152_440 0.2367774828 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
20 Hb_000454_040 0.239886406 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]

Gene co-expression network

sample Hb_008279_030 Hb_008279_030 Hb_003813_180 Hb_003813_180 Hb_008279_030--Hb_003813_180 Hb_011004_050 Hb_011004_050 Hb_008279_030--Hb_011004_050 Hb_002662_040 Hb_002662_040 Hb_008279_030--Hb_002662_040 Hb_006634_100 Hb_006634_100 Hb_008279_030--Hb_006634_100 Hb_004163_030 Hb_004163_030 Hb_008279_030--Hb_004163_030 Hb_000011_410 Hb_000011_410 Hb_008279_030--Hb_000011_410 Hb_008725_080 Hb_008725_080 Hb_003813_180--Hb_008725_080 Hb_105959_010 Hb_105959_010 Hb_003813_180--Hb_105959_010 Hb_003813_180--Hb_011004_050 Hb_003813_180--Hb_002662_040 Hb_001488_190 Hb_001488_190 Hb_003813_180--Hb_001488_190 Hb_000152_440 Hb_000152_440 Hb_011004_050--Hb_000152_440 Hb_005144_120 Hb_005144_120 Hb_011004_050--Hb_005144_120 Hb_001579_300 Hb_001579_300 Hb_011004_050--Hb_001579_300 Hb_000086_210 Hb_000086_210 Hb_011004_050--Hb_000086_210 Hb_005563_010 Hb_005563_010 Hb_011004_050--Hb_005563_010 Hb_005496_020 Hb_005496_020 Hb_011004_050--Hb_005496_020 Hb_000526_010 Hb_000526_010 Hb_002662_040--Hb_000526_010 Hb_002662_040--Hb_004163_030 Hb_002662_040--Hb_006634_100 Hb_000244_150 Hb_000244_150 Hb_002662_040--Hb_000244_150 Hb_000935_080 Hb_000935_080 Hb_002662_040--Hb_000935_080 Hb_011828_040 Hb_011828_040 Hb_002662_040--Hb_011828_040 Hb_006634_100--Hb_000935_080 Hb_006634_100--Hb_004163_030 Hb_003050_360 Hb_003050_360 Hb_006634_100--Hb_003050_360 Hb_005622_020 Hb_005622_020 Hb_006634_100--Hb_005622_020 Hb_006951_030 Hb_006951_030 Hb_006634_100--Hb_006951_030 Hb_004163_030--Hb_000526_010 Hb_001141_050 Hb_001141_050 Hb_004163_030--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_004163_030--Hb_000230_190 Hb_004155_020 Hb_004155_020 Hb_004163_030--Hb_004155_020 Hb_107495_040 Hb_107495_040 Hb_000011_410--Hb_107495_040 Hb_001606_060 Hb_001606_060 Hb_000011_410--Hb_001606_060 Hb_000025_610 Hb_000025_610 Hb_000011_410--Hb_000025_610 Hb_000069_710 Hb_000069_710 Hb_000011_410--Hb_000069_710 Hb_121881_010 Hb_121881_010 Hb_000011_410--Hb_121881_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.184653 0.0971576 1.17234 0.734998 0.0605212 0.0685037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.045669 0.430025 0.0273208 0.478939

CAGE analysis