Hb_008300_010

Information

Type -
Description -
Location Contig8300: 12487-16605
Sequence    

Annotation

kegg
ID rcu:RCOM_1430860
description UDP-N-acetylglucosamine transferase subunit alg13, putative
nr
ID XP_012089098.1
description PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
swissprot
ID Q5I0K7
description UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Rattus norvegicus GN=Alg13 PE=1 SV=1
trembl
ID A0A067JHW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23374 PE=4 SV=1
Gene Ontology
ID GO:0004577
description udp-n-acetylglucosamine transferase subunit alg13 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59808: 12294-16484 , PASA_asmbl_59809: 12294-16484 , PASA_asmbl_59810: 12704-16237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008300_010 0.0 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
2 Hb_001140_060 0.0663786366 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
3 Hb_009486_130 0.0711898942 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
4 Hb_000431_010 0.0756138336 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
5 Hb_006117_070 0.0762038197 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
6 Hb_000479_010 0.0784063506 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
7 Hb_010174_020 0.0805624082 - - protein binding protein, putative [Ricinus communis]
8 Hb_032264_110 0.0811738323 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
9 Hb_002874_190 0.0836205019 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
10 Hb_000979_230 0.0837194782 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
11 Hb_012799_160 0.0838182138 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
12 Hb_029866_070 0.0843946817 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
13 Hb_101705_030 0.0854841199 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
14 Hb_006541_030 0.0876931722 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
15 Hb_003964_100 0.088291118 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
16 Hb_000115_330 0.0890747994 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
17 Hb_009666_040 0.0896000008 - - glutathione transferase, putative [Ricinus communis]
18 Hb_000085_320 0.0901199751 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
19 Hb_000529_190 0.0902903964 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
20 Hb_002477_070 0.0903852501 - - Charged multivesicular body protein 2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_008300_010 Hb_008300_010 Hb_001140_060 Hb_001140_060 Hb_008300_010--Hb_001140_060 Hb_009486_130 Hb_009486_130 Hb_008300_010--Hb_009486_130 Hb_000431_010 Hb_000431_010 Hb_008300_010--Hb_000431_010 Hb_006117_070 Hb_006117_070 Hb_008300_010--Hb_006117_070 Hb_000479_010 Hb_000479_010 Hb_008300_010--Hb_000479_010 Hb_010174_020 Hb_010174_020 Hb_008300_010--Hb_010174_020 Hb_001140_060--Hb_006117_070 Hb_012753_160 Hb_012753_160 Hb_001140_060--Hb_012753_160 Hb_001140_060--Hb_000479_010 Hb_101705_030 Hb_101705_030 Hb_001140_060--Hb_101705_030 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030 Hb_000115_330 Hb_000115_330 Hb_009486_130--Hb_000115_330 Hb_016065_010 Hb_016065_010 Hb_009486_130--Hb_016065_010 Hb_009486_130--Hb_000431_010 Hb_000205_270 Hb_000205_270 Hb_009486_130--Hb_000205_270 Hb_005488_010 Hb_005488_010 Hb_009486_130--Hb_005488_010 Hb_002687_110 Hb_002687_110 Hb_000431_010--Hb_002687_110 Hb_031862_110 Hb_031862_110 Hb_000431_010--Hb_031862_110 Hb_001277_330 Hb_001277_330 Hb_000431_010--Hb_001277_330 Hb_000431_010--Hb_001140_060 Hb_005289_030 Hb_005289_030 Hb_006117_070--Hb_005289_030 Hb_000230_510 Hb_000230_510 Hb_006117_070--Hb_000230_510 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_006117_070--Hb_012753_160 Hb_006117_070--Hb_101705_030 Hb_000479_010--Hb_012753_160 Hb_006031_020 Hb_006031_020 Hb_000479_010--Hb_006031_020 Hb_011867_010 Hb_011867_010 Hb_000479_010--Hb_011867_010 Hb_021409_030 Hb_021409_030 Hb_000479_010--Hb_021409_030 Hb_001205_150 Hb_001205_150 Hb_010174_020--Hb_001205_150 Hb_000692_220 Hb_000692_220 Hb_010174_020--Hb_000692_220 Hb_000479_190 Hb_000479_190 Hb_010174_020--Hb_000479_190 Hb_003671_020 Hb_003671_020 Hb_010174_020--Hb_003671_020 Hb_001461_010 Hb_001461_010 Hb_010174_020--Hb_001461_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.729 2.36958 5.40948 9.66537 13.0014 14.7033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4625 24.0585 21.1306 6.4641 6.47472

CAGE analysis