Hb_008304_020

Information

Type -
Description -
Location Contig8304: 9803-21178
Sequence    

Annotation

kegg
ID rcu:RCOM_1164990
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012078188.1
description PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
swissprot
ID Q6BY27
description ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DBP2 PE=3 SV=1
trembl
ID A0A067LET9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17320 PE=3 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent rna helicase dbp2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59811: 9840-21228 , PASA_asmbl_59812: 9840-20968 , PASA_asmbl_59813: 19974-20968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008304_020 0.0 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
2 Hb_001635_110 0.0536437042 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
3 Hb_006189_020 0.056093641 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
4 Hb_003098_070 0.0639183231 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
5 Hb_007483_070 0.0671526658 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
6 Hb_001504_010 0.068114396 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
7 Hb_159809_070 0.0687993854 - - phospholipase A-2-activating protein, putative [Ricinus communis]
8 Hb_000120_890 0.0705009767 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
9 Hb_000579_080 0.0744278765 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
10 Hb_010863_050 0.0748266831 - - OTU domain-containing protein 6B, putative [Ricinus communis]
11 Hb_000076_210 0.0770527743 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
12 Hb_000078_140 0.0779271254 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
13 Hb_001269_130 0.0780570361 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
14 Hb_001227_120 0.0786226701 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
15 Hb_007894_150 0.0788984323 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
16 Hb_000476_060 0.0794600177 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
17 Hb_001300_280 0.0798971835 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
18 Hb_008206_080 0.0799753469 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
19 Hb_001279_190 0.0805094278 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
20 Hb_000409_050 0.0811755227 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]

Gene co-expression network

sample Hb_008304_020 Hb_008304_020 Hb_001635_110 Hb_001635_110 Hb_008304_020--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_008304_020--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_008304_020--Hb_003098_070 Hb_007483_070 Hb_007483_070 Hb_008304_020--Hb_007483_070 Hb_001504_010 Hb_001504_010 Hb_008304_020--Hb_001504_010 Hb_159809_070 Hb_159809_070 Hb_008304_020--Hb_159809_070 Hb_178968_060 Hb_178968_060 Hb_001635_110--Hb_178968_060 Hb_000173_190 Hb_000173_190 Hb_001635_110--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_001635_110--Hb_001300_280 Hb_001635_110--Hb_006189_020 Hb_001635_110--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_000139_080 Hb_000139_080 Hb_006189_020--Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_003098_070--Hb_006189_020 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140 Hb_001279_190 Hb_001279_190 Hb_007483_070--Hb_001279_190 Hb_007483_070--Hb_001504_010 Hb_000815_300 Hb_000815_300 Hb_007483_070--Hb_000815_300 Hb_000120_890 Hb_000120_890 Hb_007483_070--Hb_000120_890 Hb_011716_010 Hb_011716_010 Hb_007483_070--Hb_011716_010 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_001504_010--Hb_000815_300 Hb_001227_120 Hb_001227_120 Hb_159809_070--Hb_001227_120 Hb_159809_070--Hb_000078_140 Hb_079526_040 Hb_079526_040 Hb_159809_070--Hb_079526_040 Hb_065968_010 Hb_065968_010 Hb_159809_070--Hb_065968_010 Hb_159809_070--Hb_006189_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.68969 5.53106 11.7155 7.91155 4.7478 3.60449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8255 5.31906 4.05774 8.62521 8.57477

CAGE analysis