Hb_008304_050

Information

Type -
Description -
Location Contig8304: 46525-50884
Sequence    

Annotation

kegg
ID fve:101294342
description trans-cinnamate 4-monooxygenase-like
nr
ID XP_012078176.1
description PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
swissprot
ID Q43240
description Trans-cinnamate 4-monooxygenase OS=Zinnia violacea GN=CYP73A12 PE=2 SV=1
trembl
ID A0A067LB95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17318 PE=3 SV=1
Gene Ontology
ID GO:0005774
description trans-cinnamate 4-monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59814: 46578-50959 , PASA_asmbl_59815: 48390-48948 , PASA_asmbl_59816: 49046-49242
cDNA
(Sanger)
(ID:Location)		 007_O21.ab1: 46578-47351 , 019_O24.ab1: 46578-47343 , 020_J07.ab1: 46578-47324 , 033_I08.ab1: 46578-47294 , 053_P11.ab1: 46578-47269

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008304_050 0.0 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
2 Hb_000389_100 0.0554868405 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
3 Hb_004893_010 0.0874542742 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
4 Hb_003633_170 0.0881601922 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002566_020 0.0940983212 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
6 Hb_031224_010 0.099714105 - - -
7 Hb_002783_180 0.1013892692 - - Tubulin beta-6 chain [Gossypium arboreum]
8 Hb_009122_010 0.1097576755 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_009456_010 0.1133696031 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
10 Hb_007370_010 0.118312046 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
11 Hb_000561_040 0.1196788687 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
12 Hb_000011_320 0.120251154 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
13 Hb_003304_090 0.1207882484 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
14 Hb_001410_080 0.1288357609 - - ring finger protein, putative [Ricinus communis]
15 Hb_000659_050 0.1312163191 - - PREDICTED: basic blue protein-like [Jatropha curcas]
16 Hb_141194_020 0.131859881 - - carbohydrate transporter, putative [Ricinus communis]
17 Hb_159809_080 0.1406685384 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_004667_030 0.1420808142 - - hypothetical protein VITISV_034568 [Vitis vinifera]
19 Hb_049438_020 0.1445383727 - - PREDICTED: peroxidase 20 [Jatropha curcas]
20 Hb_000910_030 0.145993297 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008304_050 Hb_008304_050 Hb_000389_100 Hb_000389_100 Hb_008304_050--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_008304_050--Hb_004893_010 Hb_003633_170 Hb_003633_170 Hb_008304_050--Hb_003633_170 Hb_002566_020 Hb_002566_020 Hb_008304_050--Hb_002566_020 Hb_031224_010 Hb_031224_010 Hb_008304_050--Hb_031224_010 Hb_002783_180 Hb_002783_180 Hb_008304_050--Hb_002783_180 Hb_000561_040 Hb_000561_040 Hb_000389_100--Hb_000561_040 Hb_000389_100--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_000389_100--Hb_009456_010 Hb_000389_100--Hb_031224_010 Hb_000389_100--Hb_002783_180 Hb_004893_010--Hb_003633_170 Hb_032260_130 Hb_032260_130 Hb_004893_010--Hb_032260_130 Hb_004893_010--Hb_031224_010 Hb_164117_010 Hb_164117_010 Hb_004893_010--Hb_164117_010 Hb_003304_090 Hb_003304_090 Hb_004893_010--Hb_003304_090 Hb_003633_170--Hb_031224_010 Hb_007370_010 Hb_007370_010 Hb_003633_170--Hb_007370_010 Hb_003633_170--Hb_002566_020 Hb_003894_180 Hb_003894_180 Hb_003633_170--Hb_003894_180 Hb_002566_020--Hb_009456_010 Hb_002566_020--Hb_002783_180 Hb_002566_020--Hb_031224_010 Hb_002566_020--Hb_007370_010 Hb_000329_010 Hb_000329_010 Hb_031224_010--Hb_000329_010 Hb_031224_010--Hb_007370_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_002783_180--Hb_009456_010 Hb_004162_140 Hb_004162_140 Hb_002783_180--Hb_004162_140 Hb_000186_150 Hb_000186_150 Hb_002783_180--Hb_000186_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134197 57.9479 102.365 773.788 0.42769 0.278223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0234664 0.0184638 0.139918 325.843 314.41

CAGE analysis