Hb_008305_010

Information

Type -
Description -
Location Contig8305: 11833-16471
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008305_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000011_470 0.224351713 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
3 Hb_013420_040 0.2407155165 - - unnamed protein product [Vitis vinifera]
4 Hb_121041_010 0.2408697894 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
5 Hb_000627_020 0.24181314 - - hypothetical protein MIMGU_mgv1a021461mg, partial [Erythranthe guttata]
6 Hb_158203_010 0.2437472776 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_183191_020 0.2447625312 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003633_120 0.2537986087 - - PREDICTED: uncharacterized protein LOC104880778 [Vitis vinifera]
9 Hb_151401_010 0.2541907234 - - -
10 Hb_004235_020 0.2615389256 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
11 Hb_032717_090 0.2655682163 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004445_030 0.2697493745 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000028_380 0.2697498507 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
14 Hb_002576_010 0.2701503446 - - -
15 Hb_100684_010 0.2702013552 - - hypothetical protein, partial [Pseudomonas fluorescens]
16 Hb_054127_020 0.2716572554 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
17 Hb_012707_020 0.2718858345 - - -
18 Hb_047923_030 0.2722140359 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
19 Hb_009888_010 0.273359678 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_008680_010 0.273666111 - - -

Gene co-expression network

sample Hb_008305_010 Hb_008305_010 Hb_000011_470 Hb_000011_470 Hb_008305_010--Hb_000011_470 Hb_013420_040 Hb_013420_040 Hb_008305_010--Hb_013420_040 Hb_121041_010 Hb_121041_010 Hb_008305_010--Hb_121041_010 Hb_000627_020 Hb_000627_020 Hb_008305_010--Hb_000627_020 Hb_158203_010 Hb_158203_010 Hb_008305_010--Hb_158203_010 Hb_183191_020 Hb_183191_020 Hb_008305_010--Hb_183191_020 Hb_000405_010 Hb_000405_010 Hb_000011_470--Hb_000405_010 Hb_029238_030 Hb_029238_030 Hb_000011_470--Hb_029238_030 Hb_011892_010 Hb_011892_010 Hb_000011_470--Hb_011892_010 Hb_011931_090 Hb_011931_090 Hb_000011_470--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_000011_470--Hb_054127_020 Hb_151401_010 Hb_151401_010 Hb_000011_470--Hb_151401_010 Hb_013420_040--Hb_121041_010 Hb_042463_020 Hb_042463_020 Hb_013420_040--Hb_042463_020 Hb_013420_040--Hb_158203_010 Hb_171685_020 Hb_171685_020 Hb_013420_040--Hb_171685_020 Hb_006474_010 Hb_006474_010 Hb_013420_040--Hb_006474_010 Hb_170559_010 Hb_170559_010 Hb_013420_040--Hb_170559_010 Hb_121041_010--Hb_158203_010 Hb_003739_040 Hb_003739_040 Hb_121041_010--Hb_003739_040 Hb_003567_020 Hb_003567_020 Hb_121041_010--Hb_003567_020 Hb_180367_010 Hb_180367_010 Hb_121041_010--Hb_180367_010 Hb_121041_010--Hb_054127_020 Hb_121041_010--Hb_006474_010 Hb_056095_010 Hb_056095_010 Hb_000627_020--Hb_056095_010 Hb_000627_020--Hb_158203_010 Hb_002149_030 Hb_002149_030 Hb_000627_020--Hb_002149_030 Hb_004643_010 Hb_004643_010 Hb_000627_020--Hb_004643_010 Hb_004432_030 Hb_004432_030 Hb_000627_020--Hb_004432_030 Hb_158203_010--Hb_056095_010 Hb_158203_010--Hb_180367_010 Hb_158203_010--Hb_003567_020 Hb_004445_030 Hb_004445_030 Hb_158203_010--Hb_004445_030 Hb_158203_010--Hb_054127_020 Hb_183191_020--Hb_042463_020 Hb_062192_030 Hb_062192_030 Hb_183191_020--Hb_062192_030 Hb_156746_010 Hb_156746_010 Hb_183191_020--Hb_156746_010 Hb_034168_070 Hb_034168_070 Hb_183191_020--Hb_034168_070 Hb_072212_020 Hb_072212_020 Hb_183191_020--Hb_072212_020 Hb_004987_030 Hb_004987_030 Hb_183191_020--Hb_004987_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00448129 0.0110483 0 0 0 0.00407433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0101496 0 0 0.00948846 0.102785

CAGE analysis